bugBio++ Program Suite - Bugs: bug #16591, error: ‘writeAlignmentFile’ is...

 
 
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bug #16591: error: ‘writeAlignmentFile’ is not a member of ‘bpp::SequenceApplicationTools’

Submitted by:  Loic Dachary <loic>
Submitted on:  Mon 30 Aug 2010 08:14:25 AM UTC  
 
Category: NoneSeverity: 3 - Normal
Priority: 5 - NormalStatus: None
Privacy: PublicAssigned to: None
Open/Closed: Open

Mon 30 Aug 2010 08:14:25 AM UTC, original submission:

When compiling SVN r158 against

ii libbpp-numcalc 1.8.1 The Bio++ NumCalc library.
ii libbpp-numcalc-dev 1.8.1 The Bio++ NumCalc library development files.
ii libbpp-phyl 1.9.1 The Bio++ Phylogenetic library.
ii libbpp-phyl-dev 1.9.1 The Bio++ Phylogenetic library development files.
ii libbpp-seq 1.7.1 The Bio++ Sequence library.
ii libbpp-seq-dev 1.7.1 The Bio++ Sequence library development files.
ii libbpp-utils 1.5.1 The Bio++ Utils library.
ii libbpp-utils-dev 1.5.1 The Bio++ Utils library development files.

make
[ 10%] Building CXX object bppSuite/CMakeFiles/bppancestor.dir/bppAncestor.cpp.o
/home/loic/Downloads/bpp/bppsuite/bppSuite/bppAncestor.cpp: In function ‘int main(int, char**)’:
/home/loic/Downloads/bpp/bppsuite/bppSuite/bppAncestor.cpp:454: error: ‘writeAlignmentFile’ is not a member of ‘bpp::SequenceApplicationTools’
make[2]: *** [bppSuite/CMakeFiles/bppancestor.dir/bppAncestor.cpp.o] Error 1
make[1]: *** [bppSuite/CMakeFiles/bppancestor.dir/all] Error 2
make: *** [all] Error 2

after checking /usr/include/Seq/SequenceApplicationTools.h it looks like this is relying on a different version of the API.

Loic Dachary <loic>

 

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