relax - Bugs: bug #20378, The... [Gna!]

relax - Bugs: bug #20378, The...

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bug #20378: The Bruker.test_bug_20152_read_dc_file GUI test fails when running in GUI mode.

Submitted by:	Edward d Auvergne <bugman>
Submitted on:	Wed 19 Dec 2012 04:21:47 PM UTC

Category:	Test suite	Severity:	3 - Normal
Priority:	5 - Normal	Status:	Fixed
Privacy:	Public	Assigned to:	Edward d Auvergne <bugman>
Originator Name:		Open/Closed:	Closed
Release:	2.1.2	Operating System:	All systems

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Wed 19 Dec 2012 04:36:10 PM UTC, SVN revision 18171: Merged revisions 18169-18170 via svnmerge from svn+ssh://bugman@svn.gna.org/svn/relax/trunk ........ r18169 \| bugman \| 2012-12-19 17:33:44 +0100 (Wed, 19 Dec 2012) \| 7 lines Partial fix for bug #20378 (https://gna.org/bugs/index.php?20378). The gui_raise() function was operating differently under the command line run test suite and the GUI run test suite. The operation of the function is now consistent, and no RelaxError is raised (unless the raise_flag argument is set). ........ r18170 \| bugman \| 2012-12-19 17:35:49 +0100 (Wed, 19 Dec 2012) \| 7 lines Full fix for bug #20378 (https://gna.org/bugs/index.php?20378). As no RelaxError is no longer raised in this Bruker.test_bug_20152_read_dc_file GUI test (well only in the command line operation of the GUI tests), instead the current data pipe is checked to make sure no relaxation data was loaded. ........ (Browse SVN revision 18171)	Edward d Auvergne <bugman>
Wed 19 Dec 2012 04:35:49 PM UTC, SVN revision 18170: Full fix for bug #20378 (https://gna.org/bugs/index.php?20378). As no RelaxError is no longer raised in this Bruker.test_bug_20152_read_dc_file GUI test (well only in the command line operation of the GUI tests), instead the current data pipe is checked to make sure no relaxation data was loaded. (Browse SVN revision 18170)	Edward d Auvergne <bugman>
Wed 19 Dec 2012 04:33:44 PM UTC, SVN revision 18169: Partial fix for bug #20378 (https://gna.org/bugs/index.php?20378). The gui_raise() function was operating differently under the command line run test suite and the GUI run test suite. The operation of the function is now consistent, and no RelaxError is raised (unless the raise_flag argument is set). (Browse SVN revision 18169)	Edward d Auvergne <bugman>
Wed 19 Dec 2012 04:21:47 PM UTC, original submission: The error message from the test suite is: ====================================================================== FAIL: Test the reading of a DC file, catching bug #20152 (https://gna.org/bugs/?20152). ---------------------------------------------------------------------- relax> pipe.create(pipe_name='mf', pipe_type='mf', bundle=None) relax> structure.read_pdb(file='/data/edau/relax/relax-trunk/test_suite/shared_data/structures/1UBQ_H_trunc.pdb', dir=None, read_mol=None, set_mol_name=None, read_model=None, set_model_num=None, parser='internal') Internal relax PDB parser. Opening the file '/data/edau/relax/relax-trunk/test_suite/shared_data/structures/1UBQ_H_trunc.pdb' for reading. Adding molecule '1UBQ_H_trunc_mol1' to model None (from the original molecule number 1 of model None) relax> structure.load_spins(spin_id=None, ave_pos=True) Adding the following spins to the relax data store. # mol_name res_num res_name spin_num spin_name 1UBQ_H_trunc_mol1 1 MET 1 N 1UBQ_H_trunc_mol1 2 GLN 9 N 1UBQ_H_trunc_mol1 3 ILE 18 N relax> bruker.read(ri_id='r1_700', file='/data/edau/relax/relax-trunk/test_suite/shared_data/bruker_files/T1_demo_1UBQ_H_trunc.txt', dir=None) Opening the file '/data/edau/relax/relax-trunk/test_suite/shared_data/bruker_files/T1_demo_1UBQ_H_trunc.txt' for reading. RelaxWarning: The spin '#1UBQ_H_trunc_mol1:1@N' is already named. RelaxWarning: The spin '#1UBQ_H_trunc_mol1:2@N' is already named. RelaxWarning: The spin '#1UBQ_H_trunc_mol1:3@N' is already named. RelaxError: The old Protein Dynamics Center (PDC) files are not supported Traceback (most recent call last): File "test_suite/gui_tests/bruker.py", line 130, in test_bug_20152_read_dc_file self.assertEqual(error, True) AssertionError: False != True ----------------------------------------------------------------------	Edward d Auvergne <bugman>

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Date	Changed By	Updated Field	Previous Value	=>	Replaced By
Wed 19 Dec 2012 04:36:21 PM UTC	bugman	Status	None		Fixed
		Open/Closed	Open		Closed

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