bugrelax - Bugs: bug #21190, A weird behavior for MC...

 
 
Show feedback again

bug #21190: A weird behavior for MC simulations?

Submitted by:  Troels E. Linnet <tlinnet>
Submitted on:  Sat 12 Oct 2013 12:55:53 PM UTC  
 
Category: NoneSpecific analysis category: None
Priority: 5 - NormalSeverity: 3 - Normal
Status: FixedAssigned to: Edward d Auvergne <bugman>
Originator Name: Open/Closed: Closed
Release: Repository: trunkOperating System: All systems

Add a New Comment (Rich MarkupRich Markup):
   

You are not logged in

Please log in, so followups can be emailed to you.

 

(Jump to the original submission Jump to the original submission)

Wed 27 Nov 2013 07:53:12 AM UTC, SVN revision 21659:

Merged revisions 19169-19272,19275-19280,19310-19319,19322-19325,19328-19332,19335-19348,19359-19373,19376-19388,19439,19454-19455,19458,19461,19463,19465-19473,19475-19482,19485-19487,19491-19493,19497,19501-19506,19511,19516-19517,19528,19530,19539,19546-19548,19559-19562,19565-19567,19570,19574-19576,19579-19580,19585-19589,19611,19619-19646,19657-19661,19663-19668,19676,19679,19685-19687,19690,19693-19694,19697-19700,19710-19719,19721-19722,19735,19738-19744,19747-19767,19770-19804,19807-19856,19859-19870,19873-19874,19883,19887-19894,19896-19910,19928-19933,19936-19939,19941,19943-19946,19949-19960,19963-20036,20040,20042-20043,20047-20048,20051,20054-20058,20061-20062,20068,20071-20078,20083,20086,20094,20098-20105,20108,20137-20138,20141,20166,20169-20175,20182-20183,20185-20186,20189-20191,20196,20204-20207,20210,20217-20219,20230,20238-20239,20244,20263-20264,20266,20268-20291,20293-20336,20338-20340,20342-20349,20354-20387,20389-20390,20392-20394,20402-20420,20423-20438,20449-20473,20475-20494,20500,20524,20537-20541,20586,20628-20633,20637,20641-20646,20652-20654,20673-20674,20677-20681,20686-20736,20750-20757,20761-20774,20779,20782,20784,20787,20795-20806,20813-20872,20875-20897,20900-20911,20914,20921,20924-20926,20929,20935-20943,20949,20952-20953,20956,20959-20971,20973-20999,21004-21011,21014,21017-21024,21028-21035,21055-21088,21091-21096,21101-21102,21113-21149,21152-21158,21170-21173,21175-21186,21189-21244,21247-21256,21259-21260,21263-21268,21271-21291,21294-21296,21299-21329,21335-21345,21354-21358,21362,21365-21390,21392-21406,21456-21473,21475-21491,21496-21577,21584-21612,21615-21620,21623-21628,21633-21646 via svnmerge from
svn+ssh://bugman@svn.gna.org/svn/relax/branches/relax_disp

........
r19169 | bugman | 2013-03-27 12:12:45 +0100 (Wed, 27 Mar 2013) | 14 lines

Ported r8246 from the old relax_disp branch into the new branch.

The command used was:
svn merge -r8245:8246 svn+ssh://bugman@svn.gna.org/svn/relax/branches/relax_disp@r18123 .

.....
r8246 | semor | 2009-01-06 22:32:20 +0100 (Tue, 06 Jan 2009) | 3 lines
Changed paths:
M /branches/relax_disp/test_suite/system_tests/__init__.py

Started to implement the framework for system tests.
.....
........
r19170 | bugman | 2013-03-27 12:14:09 +0100 (Wed, 27 Mar 2013) | 19 lines

Ported r8247 from the old relax_disp branch into the new branch.

The command used was:
svn merge -r8246:8247 svn+ssh://bugman@svn.gna.org/svn/relax/branches/relax_disp@r18123 .

.....
r8247 | semor | 2009-01-06 22:36:04 +0100 (Tue, 06 Jan 2009) | 8 lines
Changed paths:
A /branches/relax_disp/test_suite/system_tests/relax_disp.py (from /branches/relax_disp/test_suite/system_tests/relax_fit.py:8240)

Copied 'test_suite/system_tests/relax_fit.py' for relaxation dispersion.

The command used was:
svn cp test_suite/system_tests/relax_fit.py test_suite/system_tests/relax_disp.py

The code now needs to be tailored for relaxation dispersion.
.....
........
r19171 | bugman | 2013-03-27 12:14:58 +0100 (Wed, 27 Mar 2013) | 14 lines

Ported r8248 from the old relax_disp branch into the new branch.

The command used was:
svn merge -r8247:8248 svn+ssh://bugman@svn.gna.org/svn/relax/branches/relax_disp@r18123 .

.....
r8248 | semor | 2009-01-06 22:46:44 +0100 (Tue, 06 Jan 2009) | 3 lines
Changed paths:
M /branches/relax_disp/test_suite/system_tests/relax_disp.py

[...] Started to implement relaxation dispersion system tests.

[...] .....

[...]........

[...] r19172 | bugman | 2013-03-27 12:38:00 +0100 (Wed, 27 Mar 2013) | 18 lines

[...]

[...] Created the user_functions.relax_disp module by copying user_functions.relax_fit.

[...]

[...] This is equivalent to r8321 of the old relax_disp branch which copied the prompt.relax_fit module.

[...]

[...] .....

[...] r8321 | semor | 2009-01-07 21:18:14 +0100 (Wed, 07 Jan 2009) | 8 lines

[...] Changed paths:

[...] A /branches/relax_disp/prompt/relax_disp.py (from /branches/relax_disp/prompt/relax_fit.py:8319)

[...]

[...] Copied 'prompt/relax_fit.py' to 'prompt/relax_disp.py'.

[...]

[...] The command used was:

[...] svn cp prompt/relax_fit.py prompt/relax_disp.py

[...]

[...] This file now needs to be modified to suit the needs of relaxation dispersion.

[...] .....

[...]........

[...] r19173 | bugman | 2013-03-27 12:54:22 +0100 (Wed, 27 Mar 2013) | 21 lines

[...]

[...] Manually created the relax_disp user functions.

[...]

[...] This is equivalent to Seb's commit at r8322 for the prompt.relax_disp module. The equivalent

[...] changes to the user_functions.relax_disp were hand edited.

[...]

[...] .....

[...] r8322 | semor | 2009-01-07 21:53:01 +0100 (Wed, 07 Jan 2009) | 10 lines

[...] Changed paths:

[...] M /branches/relax_disp/prompt/relax_disp.py

[...]

[...] Added functions to select the experiment type and mathematical model used.

[...]

[...] These functions allow the user to select the experiment type (cpmg or r1rho) as well as the

[...] mathematical model to fit the data (fast or slow).

[...]

[...] These changes follow a discussion on relaxation dispersion, and mainly the post at:

[...] https://mail.gna.org/public/relax-devel/2009-01/msg00020.html

[...] (Message-id: <7f080ed10901070529s397f7f23p914c820ced4d07f@mail.gmail.com>)

[...] .....

[...]........

[...] r19174 | bugman | 2013-03-27 12:55:14 +0100 (Wed, 27 Mar 2013) | 19 lines

[...]

[...] Ported r8323 from the old relax_disp branch into the new branch.

[...]

[...] The command used was:

[...] svn merge -r8322:8323 svn+ssh://bugman@svn.gna.org/svn/relax/branches/relax_disp@r18123 .

[...]

[...] .....

[...] r8323 | semor | 2009-01-07 21:56:49 +0100 (Wed, 07 Jan 2009) | 8 lines

[...] Changed paths:

[...] A /branches/relax_disp/test_suite/system_tests/scripts/relax_disp.py (from /branches/relax_disp/test_suite/system_tests/scripts/relax_fit.py:8319)

[...]

[...] Copied the 'relax_fit.py' script to 'relax_disp.py'.

[...]

[...] The command used was:

[...] svn cp test_suite/system_tests/scripts/relax_fit.py test_suite/system_tests/scripts/relax_disp.py

[...]

[...] This file, obviously, will need to be modified to suit the needs of the relaxation dispersion code.

[...] .....

[...]........

[...] r19175 | bugman | 2013-03-27 12:56:08 +0100 (Wed, 27 Mar 2013) | 17 lines

[...]

[...] Ported r8324 from the old relax_disp branch into the new branch.

[...]

[...] The command used was:

[...] svn merge -r8323:8324 svn+ssh://bugman@svn.gna.org/svn/relax/branches/relax_disp@r18123 .

[...]

[...] .....

[...] r8324 | semor | 2009-01-07 22:16:16 +0100 (Wed, 07 Jan 2009) | 5 lines

[...] Changed paths:

[...] M /branches/relax_disp/test_suite/system_tests/relax_disp.py

[...] M /branches/relax_disp/test_suite/system_tests/scripts/relax_disp.py

[...]

[...] Modified the script so it will test for fast-exchange curve fitting from CPMG data.

[...]

[...] Data and functions to treat it arestill missing.

[...] .....

[...]........

[...] r19176 | bugman | 2013-03-27 12:57:14 +0100 (Wed, 27 Mar 2013) | 16 lines

[...]

[...] Ported r8325 from the old relax_disp branch into the new branch.

[...]

[...] The command used was:

[...] svn merge -r8324:8325 svn+ssh://bugman@svn.gna.org/svn/relax/branches/relax_disp@r18123 .

[...]

[...] .....

[...] r8325 | semor | 2009-01-07 22:23:22 +0100 (Wed, 07 Jan 2009) | 3 lines

[...] Changed paths:

[...] M /branches/relax_disp/test_suite/system_tests/relax_disp.py

[...] D /branches/relax_disp/test_suite/system_tests/scripts/relax_disp.py

[...] A /branches/relax_disp/test_suite/system_tests/scripts/relax_disp_cpmg_fast.py (from /branches/relax_disp/test_suite/system_tests/scripts/relax_disp.py:8324)

[...]

[...] Added a test for CPMG data in slow-exchange and changed the name of the test for fast-exchange.

[...] .....

[...]........

[...] r19177 | bugman | 2013-03-27 12:59:17 +0100 (Wed, 27 Mar 2013) | 19 lines

[...]

[...] Ported r8326 from the old relax_disp branch into the new branch.

[...]

[...] The command used was:

[...] svn merge -r8325:8326 svn+ssh://bugman@svn.gna.org/svn/relax/branches/relax_disp/specific_fns/@r18123 specific_analyses

[...]

[...] .....

[...] r8326 | semor | 2009-01-07 22:33:41 +0100 (Wed, 07 Jan 2009) | 8 lines

[...] Changed paths:

[...] A /branches/relax_disp/specific_fns/relax_disp.py (from /branches/relax_disp/specific_fns/relax_fit.py:8319)

[...]

[...] Copied the 'relax_fit.py' specific functions to 'relax_disp.py'.

[...]

[...] The command used was:

[...] svn cp specific_fns/relax_fit.py specific_fns/relax_disp.py

[...]

[...] The code will now need many many many changes to suit the needs of relaxation disperison.

[...] .....

[...]........

[...] r19178 | bugman | 2013-03-27 13:01:18 +0100 (Wed, 27 Mar 2013) | 16 lines

[...]

[...] Ported r8327 from the old relax_disp branch into the new branch.

[...]

[...] The command used was:

[...] svn merge -r8326:8327 svn+ssh://bugman@svn.gna.org/svn/relax/branches/relax_disp/specific_fns/@r18123 specific_analyses

[...]

[...] .....

[...] r8327 | semor | 2009-01-07 22:53:12 +0100 (Wed, 07 Jan 2009) | 5 lines

[...] Changed paths:

[...] M /branches/relax_disp/specific_fns/relax_disp.py

[...]

[...] Made a few changes towards a functional relaxation dispersion code.

[...]

[...] This includes several modifications as well as the addition of the exp_type() function.

[...] .....

[...]........

[...] r19179 | bugman | 2013-03-27 13:02:20 +0100 (Wed, 27 Mar 2013) | 16 lines

[...]

[...] Ported r8328 from the old relax_disp branch into the new branch.

[...]

[...] The command used was:

[...] svn merge -r8327:8328 svn+ssh://bugman@svn.gna.org/svn/relax/branches/relax_disp/specific_fns/@r18123 specific_analyses

[...]

[...] .....

[...] r8328 | semor | 2009-01-08 00:16:20 +0100 (Thu, 08 Jan 2009) | 5 lines

[...] Changed paths:

[...] M /branches/relax_disp/specific_fns/relax_disp.py

[...]

[...] Moved the relax_time() function to cpmg_frq() and made other small changes.

[...]

[...] Still much (!) work is needed for this code to be complete.

[...] .....

[...]........

[...] r19180 | bugman | 2013-03-27 13:03:12 +0100 (Wed, 27 Mar 2013) | 16 lines

[...]

[...] Ported r8329 from the old relax_disp branch into the new branch.

[...]

[...] The command used was:

[...] svn merge -r8328:8329 svn+ssh://bugman@svn.gna.org/svn/relax/branches/relax_disp/specific_fns/@r18123 specific_analyses

[...]

[...] .....

[...] r8329 | semor | 2009-01-08 00:23:28 +0100 (Thu, 08 Jan 2009) | 5 lines

[...] Changed paths:

[...] M /branches/relax_disp/specific_fns/relax_disp.py

[...]

[...] Renamed 'cdp.frq' to 'cdp.cpmg_frqs' so it is not confusing with the spectrometer frequency.

[...]

[...] Indeed, 'cdp.cpmg_frqs' points to the CPMG pulse train frequency (nu_cpmg).

[...] .....

[...]........

[...] r19181 | bugman | 2013-03-27 13:03:48 +0100 (Wed, 27 Mar 2013) | 14 lines

[...]

[...] Ported r8330 from the old relax_disp branch into the new branch.

[...]

[...] The command used was:

[...] svn merge -r8329:8330 svn+ssh://bugman@svn.gna.org/svn/relax/branches/relax_disp/specific_fns/@r18123 specific_analyses

[...]

[...] .....

[...] r8330 | semor | 2009-01-08 00:38:30 +0100 (Thu, 08 Jan 2009) | 3 lines

[...] Changed paths:

[...] M /branches/relax_disp/specific_fns/relax_disp.py

[...]

[...] Changed all instances of 'relax_times' to 'cpmg_frqs' and made other small changes.

[...] .....

[...]........

[...] r19182 | bugman | 2013-03-27 13:04:25 +0100 (Wed, 27 Mar 2013) | 14 lines

[...]

[...] Ported r8331 from the old relax_disp branch into the new branch.

[...]

[...] The command used was:

[...] svn merge -r8330:8331 svn+ssh://bugman@svn.gna.org/svn/relax/branches/relax_disp/specific_fns/@r18123 specific_analyses

[...]

[...] .....

[...] r8331 | semor | 2009-01-08 00:48:34 +0100 (Thu, 08 Jan 2009) | 3 lines

[...] Changed paths:

[...] M /branches/relax_disp/specific_fns/relax_disp.py

[...]

[...] Changed 'relax_time' instances to 'cpmg_frq'.

[...] .....

[...]........

[...] r19183 | bugman | 2013-03-27 13:05:12 +0100 (Wed, 27 Mar 2013) | 20 lines

[...]

[...] Ported r8335 from the old relax_disp branch into the new branch.

[...]

[...] The command used was:

[...] svn merge -r8334:8335 svn+ssh://bugman@svn.gna.org/svn/relax/branches/relax_disp/specific_fns/@r18123 specific_analyses

[...]

[...] .....

[...] r8335 | semor | 2009-01-08 16:19:09 +0100 (Thu, 08 Jan 2009) | 9 lines

[...] Changed paths:

[...] M /branches/relax_disp/specific_fns/relax_disp.py

[...]

[...] Changed the index name and description.

[...]

[...] This is as proposed by Ed in a post at:

[...] https://mail.gna.org/public/relax-devel/2009-01/msg00029.html

[...] (Message-id: <7f080ed10901080144u541e6ed5ve52d2d233f8d7cf7@mail.gmail.com>)

[...]

[...] The description might change later to be more appropriate when the code is more mature...

[...] .....

[...]........

[...] r19184 | bugman | 2013-03-27 13:06:34 +0100 (Wed, 27 Mar 2013) | 17 lines

[...]

[...] Ported r8337 from the old relax_disp branch into the new branch.

[...]

[...] The command used was:

[...] svn merge -r8336:8337 svn+ssh://bugman@svn.gna.org/svn/relax/branches/relax_disp@r18123 .

[...]

[...] .....

[...] r8337 | semor | 2009-01-08 16:51:44 +0100 (Thu, 08 Jan 2009) | 6 lines

[...] Changed paths:

[...] M /branches/relax_disp/test_suite/system_tests/scripts/relax_disp_cpmg_fast.py

[...]

[...] Included the setting of the spectrometer frequency and uncommented a few lines of code.

[...]

[...] Of course, this won't work until the sample data has been introduced and the right namesfor the

[...] different files be input in the system test script...

[...] .....

[...]........

[...] r19185 | bugman | 2013-03-27 13:41:12 +0100 (Wed, 27 Mar 2013) | 26 lines

[...]

[...] Ported r8338 from the old relax_disp branch into the new branch (partly manually).

[...]

[...] The changes not made by hand come from the command:

[...] svn merge -r8337:8338 svn+ssh://bugman@svn.gna.org/svn/relax/branches/relax_disp/specific_fns/@r18123 specific_analyses

[...]

[...] All changes not in the specific_analyses package were hand edited.

[...]

[...] .....

[...] r8338 | semor | 2009-01-08 17:17:32 +0100 (Thu, 08 Jan 2009) | 7 lines

[...] Changed paths:

[...] M /branches/relax_disp/generic_fns/pipes.py

[...] M /branches/relax_disp/prompt/__init__.py

[...] M /branches/relax_disp/prompt/interpreter.py

[...] M /branches/relax_disp/prompt/pipe.py

[...] M /branches/relax_disp/specific_fns/__init__.py

[...] M /branches/relax_disp/specific_fns/relax_disp.py

[...] M /branches/relax_disp/specific_fns/setup.py

[...]

[...] Fixed many formatting errors and made the 'relax_disp' code accessible (pipes, interpreter, etc).

[...]

[...] These changes also include a coming back to using the C code 'math_fns/relax_fit.py' since there is

[...] still no such code associated to relaxation dispersion. This will allow workingin the code without

[...] relax crashing and complaining about the lack of a C module name 'relax_disp.py'.

[...] .....

[...]........

[...] r19186 | bugman | 2013-03-27 13:47:48 +0100 (Wed, 27 Mar 2013) | 24 lines

[...]

[...] Ported r8339 from the old relax_disp branch into the new branch.

[...]

[...] The commands used were:

[...] svn merge -r8338:8339 svn+ssh://bugman@svn.gna.org/svn/relax/branches/relax_disp@r18123 .

[...] svn merge -r8338:8339 svn+ssh://bugman@svn.gna.org/svn/relax/branches/relax_disp/specific_fns/@r18123 specific_analyses

[...]

[...] The code for the user_functions package was manually ported over.

[...]

[...] .....

[...] r8339 | semor | 2009-01-08 17:48:13 +0100 (Thu, 08 Jan 2009) | 8 lines

[...] Changed paths:

[...] M /branches/relax_disp/prompt/relax_disp.py

[...] M /branches/relax_disp/specific_fns/relax_disp.py

[...] M /branches/relax_disp/test_suite/system_tests/scripts/relax_disp_cpmg_fast.py

[...]

[...] Added the user function cpmg_delayT() which allows setting the CPMG constant time delay T used for

[...] the analysed dataset.

[...]

[...] This follows a post at:

[...] https://mail.gna.org/public/relax-devel/2009-01/msg00027.html

[...] (Message-id: <496583C7.6050607@ulaval.ca>)

[...] .....

[...]........

[...] r19187 | bugman | 2013-03-27 13:49:27 +0100 (Wed, 27 Mar 2013) | 15 lines

[...]

[...] Ported r8340 from the old relax_disp branch into the new branch.

[...]

[...] The command used was:

[...] svn merge -r8339:8340 svn+ssh://bugman@svn.gna.org/svn/relax/branches/relax_disp@r18123 .

[...]

[...] .....

[...] r8340 | semor | 2009-01-08 18:07:15 +0100 (Thu, 08 Jan 2009) | 3 lines

[...] Changed paths:

[...] M /branches/relax_disp/prompt/relax_disp.py

[...] M /branches/relax_disp/test_suite/system_tests/scripts/relax_disp_cpmg_fast.py

[...]

[...] Fixed a few typos.

[...] .....

[...]........

[...] r19188 | bugman | 2013-03-27 13:51:22 +0100 (Wed, 27 Mar 2013) | 14 lines

[...]

[...] Ported r8342 from the old relax_disp branch into the new branch.

[...]

[...] The command used was:

[...] svn merge -r8341:8342 svn+ssh://bugman@svn.gna.org/svn/relax/branches/relax_disp/specific_fns/@r18123 specific_analyses

[...]

[...] .....

[...] r8342 | semor | 2009-01-08 19:44:36 +0100 (Thu, 08 Jan 2009) | 3 lines

[...] Changed paths:

[...] M /branches/relax_disp/specific_fns/relax_disp.py

[...]

[...] Made a few changes so the cpmg_delayT() function now works.

[...] .....

[...]........

[...] r19189 | bugman | 2013-03-27 13:58:48 +0100 (Wed, 27 Mar 2013) | 18 lines

[...]

[...] Ported r8343 from the old relax_disp branch into the new branch.

[...]

[...] The command used was:

[...] svn merge -r8342:8343 svn+ssh://bugman@svn.gna.org/svn/relax/branches/relax_disp/specific_fns/@r18123 specific_analyses

[...]

[...] The user function code was ported manually from the prompt package changes to the user_functions

[...] package.

[...]

[...] .....

[...] r8343 | semor | 2009-01-08 20:13:00 +0100 (Thu, 08 Jan 2009) | 3 lines

[...] Changed paths:

[...] M /branches/relax_disp/prompt/relax_disp.py

[...] M /branches/relax_disp/specific_fns/relax_disp.py

[...]

[...] Added the user function cpmg_frq() and added examples to the user function cpmg_delayT().

[...] .....

[...]........

[...] r19190 | bugman | 2013-03-27 14:03:10 +0100 (Wed, 27 Mar 2013) | 20 lines

[...]

[...] Ported r from the old relax_disp branch into the new branch.

[...]

[...] The commands used were:

[...] svn merge -r8344:8345 svn+ssh://bugman@svn.gna.org/svn/relax/branches/relax_disp/specific_fns/@r18123 specific_analyses

[...] svn merge -r8344:8345 svn+ssh://bugman@svn.gna.org/svn/relax/branches/relax_disp/test_suite/@r18123 test_suite

[...]

[...] The prompt package changes were manually ported to the user_functions package.

[...]

[...] .....

[...] r8345 | semor | 2009-01-08 20:30:41 +0100 (Thu, 08 Jan 2009) | 4 lines

[...] Changed paths:

[...] M /branches/relax_disp/prompt/relax_disp.py

[...] M /branches/relax_disp/specific_fns/relax_disp.py

[...] M /branches/relax_disp/test_suite/system_tests/scripts/relax_disp_cpmg_fast.py

[...]

[...] Corrected remaining frq instances to cpmg_frq when appropriate to avoid confusion and corrected a

[...] few related things in the system test script.

[...] .....

[...]........

[...] r19191 | bugman | 2013-03-27 14:06:08 +0100 (Wed, 27 Mar 2013) | 11 lines

[...]

[...] Manually ported the prompt package changes of r8347 to the user_functions package.

[...]

[...] .....

[...] r8347 | semor | 2009-01-08 21:18:09 +0100 (Thu, 08 Jan 2009) | 3 lines

[...] Changed paths:

[...] M /branches/relax_disp/prompt/relax_disp.py

[...]

[...] Made the cpmg_frq() function accept only None for the reference spectrum and corrected a typo.

[...] .....

[...]........

[...] r19192 | bugman | 2013-03-27 14:07:46 +0100 (Wed, 27 Mar 2013) | 14 lines

[...]

[...] Ported r8351 from the old relax_disp branch into the new branch.

[...]

[...] The command used was:

[...] svn merge -r8350:8351 svn+ssh://bugman@svn.gna.org/svn/relax/branches/relax_disp/specific_fns/@r18123 specific_analyses

[...]

[...] .....

[...] r8351 | semor | 2009-01-09 21:09:00 +0100 (Fri, 09 Jan 2009) | 3 lines

[...] Changed paths:

[...] M /branches/relax_disp/specific_fns/relax_disp.py

[...]

[...] Added the parameters for the slow- and fast-exchange regime.

[...] .....

[...]........

[...] r19193 | bugman | 2013-03-27 14:08:20 +0100 (Wed, 27 Mar 2013) | 14 lines

[...]

[...] Ported r8352 from the old relax_disp branch into the new branch.

[...]

[...] The command used was:

[...] svn merge -r8351:8352 svn+ssh://bugman@svn.gna.org/svn/relax/branches/relax_disp/specific_fns/@r18123 specific_analyses

[...]

[...] .....

[...] r8352 | semor | 2009-01-09 21:27:59 +0100 (Fri, 09 Jan 2009) | 3 lines

[...] Changed paths:

[...] M /branches/relax_disp/specific_fns/relax_disp.py

[...]

[...] Added the parameters for the slow- and fast-exchange regime in the function data_names().

[...] .....

[...]........

[...] r19194 | bugman | 2013-03-27 14:08:59 +0100 (Wed, 27 Mar 2013) | 14 lines

[...]

[...] Ported r8353 from the old relax_disp branch into the new branch.

[...]

[...] The command used was:

[...] svn merge -r8352:8353 svn+ssh://bugman@svn.gna.org/svn/relax/branches/relax_disp/specific_fns/@r18123 specific_analyses

[...]

[...] .....

[...] r8353 | semor | 2009-01-09 21:36:55 +0100 (Fri, 09 Jan 2009) | 3 lines

[...] Changed paths:

[...] M /branches/relax_disp/specific_fns/relax_disp.py

[...]

[...] Corrected a few formatting issues and still added parameters for the slow- and fast-exchange regime.

[...] .....

[...]........

[...] r19195 | bugman | 2013-03-27 14:09:39 +0100 (Wed, 27 Mar 2013) | 18 lines

[...]

[...] Ported r8354 from the old relax_disp branch into the new branch.

[...]

[...] The command used was:

[...] svn merge -r8353:8354 svn+ssh://bugman@svn.gna.org/svn/relax/branches/relax_disp/specific_fns/@r18123 specific_analyses

[...]

[...] .....

[...] r8354 | semor | 2009-01-09 23:13:27 +0100 (Fri, 09 Jan 2009) | 7 lines

[...] Changed paths:

[...] M /branches/relax_disp/specific_fns/relax_disp.py

[...]

[...] Corrected a few formatting issues and still added parameters for the slow- and fast-exchange regime.

[...]

[...] Formatting issues corrected were spotted by Ed in a post at:

[...] https://mail.gna.org/public/relax-devel/2009-01/msg00045.html

[...] (Message-id: <7f080ed10901091243k76e08449ld2d1a4d273b97f71@mail.gmail.com>)

[...] .....

[...]........

[...] r19196 | bugman | 2013-03-27 14:10:15 +0100 (Wed, 27 Mar 2013) | 14 lines

[...]

[...] Ported r8355 from the old relax_disp branch into the new branch.

[...]

[...] The command used was:

[...] svn merge -r8354:8355 svn+ssh://bugman@svn.gna.org/svn/relax/branches/relax_disp/specific_fns/@r18123 specific_analyses

[...]

[...] .....

[...] r8355 | semor | 2009-01-10 02:16:00 +0100 (Sat, 10 Jan 2009) | 3 lines

[...] Changed paths:

[...] M /branches/relax_disp/specific_fns/relax_disp.py

[...]

[...] A bit more changes to introduce parameters for CPMG relaxation dispersion.

[...] .....

[...]........

[...] r19197 | bugman | 2013-03-27 14:11:14 +0100 (Wed, 27 Mar 2013) | 14 lines

[...]

[...] Ported r8357 from the old relax_disp branch into the new branch.

[...]

[...] The command used was:

[...] svn merge -r8356:8357 svn+ssh://bugman@svn.gna.org/svn/relax/branches/relax_disp/specific_fns/@r18123 specific_analyses

[...]

[...] .....

[...] r8357 | semor | 2009-01-10 02:45:29 +0100 (Sat, 10 Jan 2009) | 3 lines

[...] Changed paths:

[...] M /branches/relax_disp/specific_fns/relax_disp.py

[...]

[...] Introduced CPMG parameters into the function return_grace_string() and corrected formatting issues.

[...] .....

[...]........

[...] r19198 | bugman | 2013-03-27 14:11:50 +0100 (Wed, 27 Mar 2013) | 14 lines

[...]

[...] Ported r8358 from the old relax_disp branch into the new branch.

[...]

[...] The command used was:

[...] svn merge -r8357:8358 svn+ssh://bugman@svn.gna.org/svn/relax/branches/relax_disp/specific_fns/@r18123 specific_analyses

[...]

[...] .....

[...] r8358 | semor | 2009-01-10 16:51:19 +0100 (Sat, 10 Jan 2009) | 3 lines

[...] Changed paths:

[...] M /branches/relax_disp/specific_fns/relax_disp.py

[...]

[...] Introduced relaxation dispersion parameters in the function return_data_name().

[...] .....

[...]........

[...] r19199 | bugman | 2013-03-27 14:12:27 +0100 (Wed, 27 Mar 2013) | 14 lines

[...]

[...] Ported r8359 from the old relax_disp branch into the new branch.

[...]

[...] The command used was:

[...] svn merge -r8358:8359 svn+ssh://bugman@svn.gna.org/svn/relax/branches/relax_disp/specific_fns/@r18123 specific_analyses

[...]

[...] .....

[...] r8359 | semor | 2009-01-10 17:32:59 +0100 (Sat, 10 Jan 2009) | 3 lines

[...] Changed paths:

[...] M /branches/relax_disp/specific_fns/relax_disp.py

[...]

[...] Corrected some print outs...

[...] .....

[...]........

[...] r19200 | bugman | 2013-03-27 14:13:02 +0100 (Wed, 27 Mar 2013) | 14 lines

[...]

[...] Ported r8360 from the old relax_disp branch into the new branch.

[...]

[...] The command used was:

[...] svn merge -r8359:8360 svn+ssh://bugman@svn.gna.org/svn/relax/branches/relax_disp/specific_fns/@r18123 specific_analyses

[...]

[...] .....

[...] r8360 | semor | 2009-01-10 17:48:17 +0100 (Sat, 10 Jan 2009) | 3 lines

[...] Changed paths:

[...] M /branches/relax_disp/specific_fns/relax_disp.py

[...]

[...] Corrected a few dosctrings.

[...] .....

[...]........

[...] r19201 | bugman | 2013-03-27 14:15:01 +0100 (Wed, 27 Mar 2013) | 14 lines

[...]

[...] Ported r8361 from the old relax_disp branch into the new branch.

[...]

[...] The command used was:

[...] svn merge -r8360:8361 svn+ssh://bugman@svn.gna.org/svn/relax/branches/relax_disp/specific_fns/@r18123 specific_analyses

[...]

[...] .....

[...] r8361 | semor | 2009-01-10 17:56:56 +0100 (Sat, 10 Jan 2009) | 3 lines

[...] Changed paths:

[...] M /branches/relax_disp/specific_fns/relax_disp.py

[...]

[...] Changed the default cpmg_frq value in cpmg_frq() from 0 to None.

[...] .....

[...]........

[...] r19202 | bugman | 2013-03-27 14:16:22 +0100 (Wed, 27 Mar 2013) | 45 lines

[...]

[...] Ported r8362 from the old relax_disp branch into the new branch.

[...]

[...] The command used was:

[...] svn merge -r8361:8362 svn+ssh://bugman@svn.gna.org/svn/relax/branches/relax_disp@r18123 .

[...]

[...] .....

[...] r8362 | semor | 2009-01-10 21:09:49 +0100 (Sat, 10 Jan 2009) | 11 lines

[...] Changed paths:

[...] A /branches/relax_disp/test_suite/shared_data/curve_fitting_disp

[...] A /branches/relax_disp/test_suite/shared_data/curve_fitting_disp/dataset_1

[...] A /branches/relax_disp/test_suite/shared_data/curve_fitting_disp/dataset_1/1000.in

[...] A /branches/relax_disp/test_suite/shared_data/curve_fitting_disp/dataset_1/133.33.in

[...] A /branches/relax_disp/test_suite/shared_data/curve_fitting_disp/dataset_1/133.33.in.bis

[...] A /branches/relax_disp/test_suite/shared_data/curve_fitting_disp/dataset_1/200.in

[...] A /branches/relax_disp/test_suite/shared_data/curve_fitting_disp/dataset_1/266.67.in

[...] A /branches/relax_disp/test_suite/shared_data/curve_fitting_disp/dataset_1/333.33.in

[...] A /branches/relax_disp/test_suite/shared_data/curve_fitting_disp/dataset_1/400.in

[...] A /branches/relax_disp/test_suite/shared_data/curve_fitting_disp/dataset_1/466.67.in

[...] A /branches/relax_disp/test_suite/shared_data/curve_fitting_disp/dataset_1/533.33.in

[...] A /branches/relax_disp/test_suite/shared_data/curve_fitting_disp/dataset_1/533.33.in.bis

[...] A /branches/relax_disp/test_suite/shared_data/curve_fitting_disp/dataset_1/600.in

[...] A /branches/relax_disp/test_suite/shared_data/curve_fitting_disp/dataset_1/66.667.in

[...] A /branches/relax_disp/test_suite/shared_data/curve_fitting_disp/dataset_1/666.67.in

[...] A /branches/relax_disp/test_suite/shared_data/curve_fitting_disp/dataset_1/733.33.in

[...] A /branches/relax_disp/test_suite/shared_data/curve_fitting_disp/dataset_1/800.in

[...] A /branches/relax_disp/test_suite/shared_data/curve_fitting_disp/dataset_1/866.67.in

[...] A /branches/relax_disp/test_suite/shared_data/curve_fitting_disp/dataset_1/933.33.in

[...] A /branches/relax_disp/test_suite/shared_data/curve_fitting_disp/dataset_1/933.33.in.bis

[...] A /branches/relax_disp/test_suite/shared_data/curve_fitting_disp/dataset_1/fake_sequence.in

[...] A /branches/relax_disp/test_suite/shared_data/curve_fitting_disp/dataset_1/readme

[...] A /branches/relax_disp/test_suite/shared_data/curve_fitting_disp/dataset_1/reference.in

[...] M /branches/relax_disp/test_suite/system_tests/scripts/relax_disp_cpmg_fast.py

[...]

[...] Added a relaxation dispersion dataset in the system-test.

[...]

[...] This was kindly provided by Dr Flemming Hansen (flemming AT pound DOT med DOT utoronto DOT ca) and

[...] was previously published in: Hansen, Vallurupalli & Kay, 2008, JPhysChemB, 112: 5898-5904.

[...]

[...] The original format was different and was modified to better suit the way relax handles datasets.

[...]

[...] Finally, the information contained here were written in a 'readme' file placed in the same

[...] directory as the dataset itself to allow referencing and acknowledgments.

[...] .....

[...]........

[...] r19203 | bugman | 2013-03-27 14:17:17 +0100 (Wed, 27 Mar 2013) | 35 lines

[...]

[...] Ported r8363 from the old relax_disp branch into the new branch.

[...]

[...] The command used was:

[...] svn merge -r8362:8363 svn+ssh://bugman@svn.gna.org/svn/relax/branches/relax_disp@r18123 .

[...]

[...] .....

[...] r8363 | semor | 2009-01-10 21:50:01 +0100 (Sat, 10 Jan 2009) | 4 lines

[...] Changed paths:

[...] A /branches/relax_disp/test_suite/shared_data/curve_fitting_disp/dataset_1/1000.in_sparky

[...] A /branches/relax_disp/test_suite/shared_data/curve_fitting_disp/dataset_1/133.33.in.bis_sparky

[...] A /branches/relax_disp/test_suite/shared_data/curve_fitting_disp/dataset_1/133.33.in_sparky

[...] A /branches/relax_disp/test_suite/shared_data/curve_fitting_disp/dataset_1/200.in_sparky

[...] A /branches/relax_disp/test_suite/shared_data/curve_fitting_disp/dataset_1/266.67.in_sparky

[...] A /branches/relax_disp/test_suite/shared_data/curve_fitting_disp/dataset_1/333.33.in_sparky

[...] A /branches/relax_disp/test_suite/shared_data/curve_fitting_disp/dataset_1/400.in_sparky

[...] A /branches/relax_disp/test_suite/shared_data/curve_fitting_disp/dataset_1/466.67.in_sparky

[...] A /branches/relax_disp/test_suite/shared_data/curve_fitting_disp/dataset_1/533.33.in.bis_sparky

[...] A /branches/relax_disp/test_suite/shared_data/curve_fitting_disp/dataset_1/533.33.in_sparky

[...] A /branches/relax_disp/test_suite/shared_data/curve_fitting_disp/dataset_1/600.in_sparky

[...] A /branches/relax_disp/test_suite/shared_data/curve_fitting_disp/dataset_1/66.667.in_sparky

[...] A /branches/relax_disp/test_suite/shared_data/curve_fitting_disp/dataset_1/666.67.in_sparky

[...] A /branches/relax_disp/test_suite/shared_data/curve_fitting_disp/dataset_1/733.33.in_sparky

[...] A /branches/relax_disp/test_suite/shared_data/curve_fitting_disp/dataset_1/800.in_sparky

[...] A /branches/relax_disp/test_suite/shared_data/curve_fitting_disp/dataset_1/866.67.in_sparky

[...] A /branches/relax_disp/test_suite/shared_data/curve_fitting_disp/dataset_1/933.33.in.bis_sparky

[...] A /branches/relax_disp/test_suite/shared_data/curve_fitting_disp/dataset_1/933.33.in_sparky

[...] M /branches/relax_disp/test_suite/shared_data/curve_fitting_disp/dataset_1/readme

[...] A /branches/relax_disp/test_suite/shared_data/curve_fitting_disp/dataset_1/reference.in_sparky

[...] M /branches/relax_disp/test_suite/system_tests/scripts/relax_disp_cpmg_fast.py

[...]

[...] Added 'Sparky' formatted files to the system-test so the files can be input and development of the

[...] branch continued.

[...] .....

[...]........

[...] r19204 | bugman | 2013-03-27 14:19:40 +0100 (Wed, 27 Mar 2013) | 16 lines

[...]

[...] Ported r8364 from the old relax_disp branch into the new branch.

[...]

[...] The commands used were:

[...] svn merge -r8363:8364 svn+ssh://bugman@svn.gna.org/svn/relax/branches/relax_disp/specific_fns/@r18123 specific_analyses

[...] svn merge -r8363:8364 svn+ssh://bugman@svn.gna.org/svn/relax/branches/relax_disp/test_suite/@r18123 test_suite

[...]

[...] .....

[...] r8364 | semor | 2009-01-10 21:57:57 +0100 (Sat, 10 Jan 2009) | 3 lines

[...] Changed paths:

[...] M /branches/relax_disp/specific_fns/relax_disp.py

[...] M /branches/relax_disp/test_suite/system_tests/scripts/relax_disp_cpmg_fast.py

[...]

[...] Changed the format of the CPMG frequency and corrected the names of some input files.

[...] .....

[...]........

[...] r19205 | bugman | 2013-03-27 14:20:28 +0100 (Wed, 27 Mar 2013) | 14 lines

[...]

[...] Ported r8365 from the old relax_disp branch into the new branch.

[...]

[...] The command used was:

[...] svn merge -r8364:8365 svn+ssh://bugman@svn.gna.org/svn/relax/branches/relax_disp@r18123 .

[...]

[...] .....

[...] r8365 | semor | 2009-01-10 22:04:27 +0100 (Sat, 10 Jan 2009) | 3 lines

[...] Changed paths:

[...] A /branches/relax_disp/test_suite/shared_data/curve_fitting_disp/dataset_1/unresolved

[...]

[...] Added an unresolved file to meet the script requirements.

[...] .....

[...]........

[...] r19206 | bugman | 2013-03-27 14:21:09 +0100 (Wed, 27 Mar 2013) | 14 lines

[...]

[...] Ported r8366 from the old relax_disp branch into the new branch.

[...]

[...] The command used was:

[...] svn merge -r8365:8366 svn+ssh://bugman@svn.gna.org/svn/relax/branches/relax_disp@r18123 .

[...]

[...] .....

[...] r8366 | semor | 2009-01-11 00:08:47 +0100 (Sun, 11 Jan 2009) | 3 lines

[...] Changed paths:

[...] A /branches/relax_disp/test_suite/system_tests/scripts/relax_disp_cpmg_slow.py (from /branches/relax_disp/test_suite/system_tests/scripts/relax_disp_cpmg_fast.py:8364)

[...]

[...] Copied the script for the fast-exchange regime to the slow-exchange regime.

[...] .....

[...]........

[...] r19207 | bugman | 2013-03-27 14:22:17 +0100 (Wed, 27 Mar 2013) | 17 lines

[...]

[...] Ported r8367 from the old relax_disp branch into the new branch.

[...]

[...] The command used was:

[...] svn merge -r8366:8367 svn+ssh://bugman@svn.gna.org/svn/relax/branches/relax_disp@r18123 .

[...]

[...] .....

[...] r8367 | semor | 2009-01-11 00:10:31 +0100 (Sun, 11 Jan 2009) | 6 lines

[...] Changed paths:

[...] M /branches/relax_disp/test_suite/system_tests/scripts/relax_disp_cpmg_slow.py

[...]

[...] Modified the newly copied script so it is effectively for the slow-exchange regime.

[...]

[...] Note that this script was originally copied using the command:

[...] svn cp test_suite/system_tests/scripts/relax_disp_cpmg_fast.py test_suite/system_tests/scripts/relax_disp_cpmg_slow.py

[...] .....

[...]........

[...] r19208 | bugman | 2013-03-27 14:24:05 +0100 (Wed, 27 Mar 2013) | 62 lines

[...]

[...] Ported r8389 from the old relax_disp branch into the new branch.

[...]

[...] The command used was:

[...] svn merge -r8388:8389 svn+ssh://bugman@svn.gna.org/svn/relax/branches/relax_disp@r18123 .

[...]

[...] .....

[...] r8389 | semor | 2009-01-11 18:28:31 +0100 (Sun, 11 Jan 2009) | 6 lines

[...] Changed paths:

[...] D /branches/relax_disp/test_suite/shared_data/curve_fitting_disp/dataset_1

[...] A /branches/relax_disp/test_suite/shared_data/curve_fitting_disp/dataset_1-a (from /branches/relax_disp/test_suite/shared_data/curve_fitting_disp/dataset_1:8362)

[...] A /branches/relax_disp/test_suite/shared_data/curve_fitting_disp/dataset_1-a/1000.in_sparky (from /branches/relax_disp/test_suite/shared_data/curve_fitting_disp/dataset_1/1

[...] 000.in_sparky:8363)

[...] A /branches/relax_disp/test_suite/shared_data/curve_fitting_disp/dataset_1-a/133.33.in.bis_sparky (from /branches/relax_disp/test_suite/shared_data/curve_fitting_disp/datas

[...] et_1/133.33.in.bis_sparky:8363)

[...] A /branches/relax_disp/test_suite/shared_data/curve_fitting_disp/dataset_1-a/133.33.in_sparky (from /branches/relax_disp/test_suite/shared_data/curve_fitting_disp/dataset_1

[...] /133.33.in_sparky:8363)

[...] A /branches/relax_disp/test_suite/shared_data/curve_fitting_disp/dataset_1-a/200.in_sparky (from /branches/relax_disp/test_suite/shared_data/curve_fitting_disp/dataset_1/20

[...] 0.in_sparky:8363)

[...] A /branches/relax_disp/test_suite/shared_data/curve_fitting_disp/dataset_1-a/266.67.in_sparky (from /branches/relax_disp/test_suite/shared_data/curve_fitting_disp/dataset_1

[...] /266.67.in_sparky:8363)

[...] A /branches/relax_disp/test_suite/shared_data/curve_fitting_disp/dataset_1-a/333.33.in_sparky (from /branches/relax_disp/test_suite/shared_data/curve_fitting_disp/dataset_1

[...] /333.33.in_sparky:8363)

[...] A /branches/relax_disp/test_suite/shared_data/curve_fitting_disp/dataset_1-a/400.in_sparky (from /branches/relax_disp/test_suite/shared_data/curve_fitting_disp/dataset_1/40

[...] 0.in_sparky:8363)

[...] A /branches/relax_disp/test_suite/shared_data/curve_fitting_disp/dataset_1-a/466.67.in_sparky (from /branches/relax_disp/test_suite/shared_data/curve_fitting_disp/dataset_1

[...] /466.67.in_sparky:8363)

[...] A /branches/relax_disp/test_suite/shared_data/curve_fitting_disp/dataset_1-a/533.33.in.bis_sparky (from /branches/relax_disp/test_suite/shared_data/curve_fitting_disp/datas

[...] et_1/533.33.in.bis_sparky:8363)

[...] A /branches/relax_disp/test_suite/shared_data/curve_fitting_disp/dataset_1-a/533.33.in_sparky (from /branches/relax_disp/test_suite/shared_data/curve_fitting_disp/dataset_1

[...] /533.33.in_sparky:8363)

[...] A /branches/relax_disp/test_suite/shared_data/curve_fitting_disp/dataset_1-a/600.in_sparky (from /branches/relax_disp/test_suite/shared_data/curve_fitting_disp/dataset_1/60

[...] 0.in_sparky:8363)

[...] A /branches/relax_disp/test_suite/shared_data/curve_fitting_disp/dataset_1-a/66.667.in_sparky (from /branches/relax_disp/test_suite/shared_data/curve_fitting_disp/dataset_1

[...] /66.667.in_sparky:8363)

[...] A /branches/relax_disp/test_suite/shared_data/curve_fitting_disp/dataset_1-a/666.67.in_sparky (from /branches/relax_disp/test_suite/shared_data/curve_fitting_disp/dataset_1

[...] /666.67.in_sparky:8363)

[...] A /branches/relax_disp/test_suite/shared_data/curve_fitting_disp/dataset_1-a/733.33.in_sparky (from /branches/relax_disp/test_suite/shared_data/curve_fitting_disp/dataset_1

[...] /733.33.in_sparky:8363)

[...] A /branches/relax_disp/test_suite/shared_data/curve_fitting_disp/dataset_1-a/800.in_sparky (from /branches/relax_disp/test_suite/shared_data/curve_fitting_disp/dataset_1/80

[...] 0.in_sparky:8363)

[...] A /branches/relax_disp/test_suite/shared_data/curve_fitting_disp/dataset_1-a/866.67.in_sparky (from /branches/relax_disp/test_suite/shared_data/curve_fitting_disp/dataset_1

[...] /866.67.in_sparky:8363)

[...] A /branches/relax_disp/test_suite/shared_data/curve_fitting_disp/dataset_1-a/933.33.in.bis_sparky (from /branches/relax_disp/test_suite/shared_data/curve_fitting_disp/datas

[...] et_1/933.33.in.bis_sparky:8363)

[...] A /branches/relax_disp/test_suite/shared_data/curve_fitting_disp/dataset_1-a/933.33.in_sparky (from /branches/relax_disp/test_suite/shared_data/curve_fitting_disp/dataset_1

[...] /933.33.in_sparky:8363)

[...] R /branches/relax_disp/test_suite/shared_data/curve_fitting_disp/dataset_1-a/readme (from /branches/relax_disp/test_suite/shared_data/curve_fitting_disp/dataset_1/readme:83

[...] 63)

[...] A /branches/relax_disp/test_suite/shared_data/curve_fitting_disp/dataset_1-a/reference.in_sparky (from /branches/relax_disp/test_suite/shared_data/curve_fitting_disp/datase

[...] t_1/reference.in_sparky:8363)

[...] A /branches/relax_disp/test_suite/shared_data/curve_fitting_disp/dataset_1-a/unresolved (from /branches/relax_disp/test_suite/shared_data/curve_fitting_disp/dataset_1/unres

[...] olved:8365)

[...] M /branches/relax_disp/test_suite/system_tests/scripts/relax_disp_cpmg_fast.py

[...] M /branches/relax_disp/test_suite/system_tests/scripts/relax_disp_cpmg_slow.py

[...]

[...] Added details to the readme file and changed the directory name where the sample data is located.

[...]

[...] The directory is now named 'dataset_1-a'. This contains data recorded at 500 MHz. Data recorded at

[...] 800 MHz will be put in a directory called 'dataset_1-b'.

[...] .....

[...]........

[...] r19209 | bugman | 2013-03-27 14:24:55 +0100 (Wed, 27 Mar 2013) | 20 lines

[...]

[...] Ported r8390 from the old relax_disp branch into the new branch.

[...]

[...] The command used was:

[...] svn merge -r8389:8390 svn+ssh://bugman@svn.gna.org/svn/relax/branches/relax_disp@r18123 .

[...]

[...] .....

[...] r8390 | semor | 2009-01-11 18:37:42 +0100 (Sun, 11 Jan 2009) | 7 lines

[...] Changed paths:

[...] A /branches/relax_disp/test_suite/shared_data/curve_fitting_disp/dataset_1-b

[...] A /branches/relax_disp/test_suite/shared_data/curve_fitting_disp/dataset_1-b/readme (from /branches/relax_disp/test_suite/shared_data/curve_fitting_disp/dataset_1-a/readme:

[...] 8389)

[...]

[...] Created a directory for the data recorded at 800 MHz and put a readme file explaining its origin.

[...]

[...] The readme file was copied using the command:

[...] svn cp test_suite/shared_data/curve_fitting_disp/dataset_1-a/readme test_suite/shared_data/curve_fitting_disp/dataset_1-b/readme

[...] and was subsequently modified.

[...] .....

[...]........

[...] r19210 | bugman | 2013-03-27 14:25:51 +0100 (Wed, 27 Mar 2013) | 57 lines

[...]

[...] Ported r8391 from the old relax_disp branch into the new branch.

[...]

[...] The command used was:

[...] svn merge -r8390:8391 svn+ssh://bugman@svn.gna.org/svn/relax/branches/relax_disp@r18123 .

[...]

[...] .....

[...] r8391 | semor | 2009-01-11 18:54:13 +0100 (Sun, 11 Jan 2009) | 9 lines

[...] Changed paths:

[...] A /branches/relax_disp/test_suite/shared_data/curve_fitting_disp/dataset_1-b/1000.in

[...] A /branches/relax_disp/test_suite/shared_data/curve_fitting_disp/dataset_1-b/1000.in_sparky

[...] A /branches/relax_disp/test_suite/shared_data/curve_fitting_disp/dataset_1-b/133.33.in

[...] A /branches/relax_disp/test_suite/shared_data/curve_fitting_disp/dataset_1-b/133.33.in.bis

[...] A /branches/relax_disp/test_suite/shared_data/curve_fitting_disp/dataset_1-b/133.33.in.bis_sparky

[...] A /branches/relax_disp/test_suite/shared_data/curve_fitting_disp/dataset_1-b/133.33.in_sparky

[...] A /branches/relax_disp/test_suite/shared_data/curve_fitting_disp/dataset_1-b/200.in

[...] A /branches/relax_disp/test_suite/shared_data/curve_fitting_disp/dataset_1-b/200.in_sparky

[...] A /branches/relax_disp/test_suite/shared_data/curve_fitting_disp/dataset_1-b/266.67.in

[...] A /branches/relax_disp/test_suite/shared_data/curve_fitting_disp/dataset_1-b/266.67.in_sparky

[...] A /branches/relax_disp/test_suite/shared_data/curve_fitting_disp/dataset_1-b/333.33.in

[...] A /branches/relax_disp/test_suite/shared_data/curve_fitting_disp/dataset_1-b/333.33.in_sparky

[...] A /branches/relax_disp/test_suite/shared_data/curve_fitting_disp/dataset_1-b/400.in

[...] A /branches/relax_disp/test_suite/shared_data/curve_fitting_disp/dataset_1-b/400.in_sparky

[...] A /branches/relax_disp/test_suite/shared_data/curve_fitting_disp/dataset_1-b/466.67.in

[...] A /branches/relax_disp/test_suite/shared_data/curve_fitting_disp/dataset_1-b/466.67.in_sparky

[...] A /branches/relax_disp/test_suite/shared_data/curve_fitting_disp/dataset_1-b/533.33.in

[...] A /branches/relax_disp/test_suite/shared_data/curve_fitting_disp/dataset_1-b/533.33.in.bis

[...] A /branches/relax_disp/test_suite/shared_data/curve_fitting_disp/dataset_1-b/533.33.in.bis_sparky

[...] A /branches/relax_disp/test_suite/shared_data/curve_fitting_disp/dataset_1-b/533.33.in_sparky

[...] A /branches/relax_disp/test_suite/shared_data/curve_fitting_disp/dataset_1-b/600.in

[...] A /branches/relax_disp/test_suite/shared_data/curve_fitting_disp/dataset_1-b/600.in_sparky

[...] A /branches/relax_disp/test_suite/shared_data/curve_fitting_disp/dataset_1-b/66.667.in

[...] A /branches/relax_disp/test_suite/shared_data/curve_fitting_disp/dataset_1-b/66.667.in_sparky

[...] A /branches/relax_disp/test_suite/shared_data/curve_fitting_disp/dataset_1-b/666.67.in

[...] A /branches/relax_disp/test_suite/shared_data/curve_fitting_disp/dataset_1-b/666.67.in_sparky

[...] A /branches/relax_disp/test_suite/shared_data/curve_fitting_disp/dataset_1-b/733.33.in

[...] A /branches/relax_disp/test_suite/shared_data/curve_fitting_disp/dataset_1-b/733.33.in_sparky

[...] A /branches/relax_disp/test_suite/shared_data/curve_fitting_disp/dataset_1-b/800.in

[...] A /branches/relax_disp/test_suite/shared_data/curve_fitting_disp/dataset_1-b/800.in_sparky

[...] A /branches/relax_disp/test_suite/shared_data/curve_fitting_disp/dataset_1-b/866.67.in

[...] A /branches/relax_disp/test_suite/shared_data/curve_fitting_disp/dataset_1-b/866.67.in_sparky

[...] A /branches/relax_disp/test_suite/shared_data/curve_fitting_disp/dataset_1-b/933.33.in

[...] A /branches/relax_disp/test_suite/shared_data/curve_fitting_disp/dataset_1-b/933.33.in.bis

[...] A /branches/relax_disp/test_suite/shared_data/curve_fitting_disp/dataset_1-b/933.33.in.bis_sparky

[...] A /branches/relax_disp/test_suite/shared_data/curve_fitting_disp/dataset_1-b/933.33.in_sparky

[...] A /branches/relax_disp/test_suite/shared_data/curve_fitting_disp/dataset_1-b/reference.in

[...] A /branches/relax_disp/test_suite/shared_data/curve_fitting_disp/dataset_1-b/reference.in_sparky

[...]

[...] Added the relaxation dispersion dataset recorded at 800 MHz in the system-test.

[...]

[...] This was kindly provided by Dr Flemming Hansen (flemming AT pound DOT med DOT utoronto DOT ca) and

[...] was previously published in: Hansen, Vallurupalli & Kay, 2008, JPhysChemB, 112: 5898-5904.

[...]

[...] The original format was different and two formats were made ('generic' and 'sparky'), as for the

[...] dataset recorded at 500 MHz.

[...] .....

[...]........

[...] r19211 | bugman | 2013-03-27 14:27:31 +0100 (Wed, 27 Mar 2013) | 86 lines

[...]

[...] Ported r8394 from the old relax_disp branch into the new branch.

[...]

[...] The command used was:

[...] svn merge -r8393:8394 svn+ssh://bugman@svn.gna.org/svn/relax/branches/relax_disp@r18123 .

[...]

[...] .....

[...] r8394 | semor | 2009-01-11 21:09:38 +0100 (Sun, 11 Jan 2009) | 9 lines

[...] Changed paths:

[...] A /branches/relax_disp/test_suite/shared_data/curve_fitting_disp/Hansen

[...] A /branches/relax_disp/test_suite/shared_data/curve_fitting_disp/Hansen/500_MHz (from /branches/relax_disp/test_suite/shared_data/curve_fitting_disp/dataset_1-a:8389)

[...] A /branches/relax_disp/test_suite/shared_data/curve_fitting_disp/Hansen/800_MHz (from /branches/relax_disp/test_suite/shared_data/curve_fitting_disp/dataset_1-b:8390)

[...] A /branches/relax_disp/test_suite/shared_data/curve_fitting_disp/Hansen/800_MHz/1000.in (from /branches/relax_disp/test_suite/shared_data/curve_fitting_disp/dataset_1-b/100

[...] 0.in:8391)

[...] A /branches/relax_disp/test_suite/shared_data/curve_fitting_disp/Hansen/800_MHz/1000.in_sparky (from /branches/relax_disp/test_suite/shared_data/curve_fitting_disp/dataset_

[...] 1-b/1000.in_sparky:8391)

[...] A /branches/relax_disp/test_suite/shared_data/curve_fitting_disp/Hansen/800_MHz/133.33.in (from /branches/relax_disp/test_suite/shared_data/curve_fitting_disp/dataset_1-b/1

[...] 33.33.in:8391)

[...] A /branches/relax_disp/test_suite/shared_data/curve_fitting_disp/Hansen/800_MHz/133.33.in.bis (from /branches/relax_disp/test_suite/shared_data/curve_fitting_disp/dataset_1

[...] -b/133.33.in.bis:8391)

[...] A /branches/relax_disp/test_suite/shared_data/curve_fitting_disp/Hansen/800_MHz/133.33.in.bis_sparky (from /branches/relax_disp/test_suite/shared_data/curve_fitting_disp/da

[...] taset_1-b/133.33.in.bis_sparky:8391)

[...] A /branches/relax_disp/test_suite/shared_data/curve_fitting_disp/Hansen/800_MHz/133.33.in_sparky (from /branches/relax_disp/test_suite/shared_data/curve_fitting_disp/datase

[...] t_1-b/133.33.in_sparky:8391)

[...] A /branches/relax_disp/test_suite/shared_data/curve_fitting_disp/Hansen/800_MHz/200.in (from /branches/relax_disp/test_suite/shared_data/curve_fitting_disp/dataset_1-b/200.

[...] in:8391)

[...] A /branches/relax_disp/test_suite/shared_data/curve_fitting_disp/Hansen/800_MHz/200.in_sparky (from /branches/relax_disp/test_suite/shared_data/curve_fitting_disp/dataset_1

[...] -b/200.in_sparky:8391)

[...] A /branches/relax_disp/test_suite/shared_data/curve_fitting_disp/Hansen/800_MHz/266.67.in (from /branches/relax_disp/test_suite/shared_data/curve_fitting_disp/dataset_1-b/2

[...] 66.67.in:8391)

[...] A /branches/relax_disp/test_suite/shared_data/curve_fitting_disp/Hansen/800_MHz/266.67.in_sparky (from /branches/relax_disp/test_suite/shared_data/curve_fitting_disp/datase

[...] t_1-b/266.67.in_sparky:8391)

[...] A /branches/relax_disp/test_suite/shared_data/curve_fitting_disp/Hansen/800_MHz/333.33.in (from /branches/relax_disp/test_suite/shared_data/curve_fitting_disp/dataset_1-b/3

[...] 33.33.in:8391)

[...] A /branches/relax_disp/test_suite/shared_data/curve_fitting_disp/Hansen/800_MHz/333.33.in_sparky (from /branches/relax_disp/test_suite/shared_data/curve_fitting_disp/datase

[...] t_1-b/333.33.in_sparky:8391)

[...] A /branches/relax_disp/test_suite/shared_data/curve_fitting_disp/Hansen/800_MHz/400.in (from /branches/relax_disp/test_suite/shared_data/curve_fitting_disp/dataset_1-b/400.

[...] in:8391)

[...] A /branches/relax_disp/test_suite/shared_data/curve_fitting_disp/Hansen/800_MHz/400.in_sparky (from /branches/relax_disp/test_suite/shared_data/curve_fitting_disp/dataset_1

[...] -b/400.in_sparky:8391)

[...] A /branches/relax_disp/test_suite/shared_data/curve_fitting_disp/Hansen/800_MHz/466.67.in (from /branches/relax_disp/test_suite/shared_data/curve_fitting_disp/dataset_1-b/4

[...] 66.67.in:8391)

[...] A /branches/relax_disp/test_suite/shared_data/curve_fitting_disp/Hansen/800_MHz/466.67.in_sparky (from /branches/relax_disp/test_suite/shared_data/curve_fitting_disp/datase

[...] t_1-b/466.67.in_sparky:8391)

[...] A /branches/relax_disp/test_suite/shared_data/curve_fitting_disp/Hansen/800_MHz/533.33.in (from /branches/relax_disp/test_suite/shared_data/curve_fitting_disp/dataset_1-b/5

[...] 33.33.in:8391)

[...] A /branches/relax_disp/test_suite/shared_data/curve_fitting_disp/Hansen/800_MHz/533.33.in.bis (from /branches/relax_disp/test_suite/shared_data/curve_fitting_disp/dataset_1

[...] -b/533.33.in.bis:8391)

[...] A /branches/relax_disp/test_suite/shared_data/curve_fitting_disp/Hansen/800_MHz/533.33.in.bis_sparky (from /branches/relax_disp/test_suite/shared_data/curve_fitting_disp/da

[...] taset_1-b/533.33.in.bis_sparky:8391)

[...] A /branches/relax_disp/test_suite/shared_data/curve_fitting_disp/Hansen/800_MHz/533.33.in_sparky (from /branches/relax_disp/test_suite/shared_data/curve_fitting_disp/datase

[...] t_1-b/533.33.in_sparky:8391)

[...] A /branches/relax_disp/test_suite/shared_data/curve_fitting_disp/Hansen/800_MHz/600.in (from /branches/relax_disp/test_suite/shared_data/curve_fitting_disp/dataset_1-b/600.

[...] in:8391)

[...] A /branches/relax_disp/test_suite/shared_data/curve_fitting_disp/Hansen/800_MHz/600.in_sparky (from /branches/relax_disp/test_suite/shared_data/curve_fitting_disp/dataset_1

[...] -b/600.in_sparky:8391)

[...] A /branches/relax_disp/test_suite/shared_data/curve_fitting_disp/Hansen/800_MHz/66.667.in (from /branches/relax_disp/test_suite/shared_data/curve_fitting_disp/dataset_1-b/66.667.in:8391)

[...] A /branches/relax_disp/test_suite/shared_data/curve_fitting_disp/Hansen/800_MHz/66.667.in_sparky (from /branches/relax_disp/test_suite/shared_data/curve_fitting_disp/dataset_1-b/66.667.in_sparky:8391)

[...] A /branches/relax_disp/test_suite/shared_data/curve_fitting_disp/Hansen/800_MHz/666.67.in (from /branches/relax_disp/test_suite/shared_data/curve_fitting_disp/dataset_1-b/666.67.in:8391)

[...] A /branches/relax_disp/test_suite/shared_data/curve_fitting_disp/Hansen/800_MHz/666.67.in_sparky (from /branches/relax_disp/test_suite/shared_data/curve_fitting_disp/dataset_1-b/666.67.in_sparky:8391)

[...] A /branches/relax_disp/test_suite/shared_data/curve_fitting_disp/Hansen/800_MHz/733.33.in (from /branches/relax_disp/test_suite/shared_data/curve_fitting_disp/dataset_1-b/733.33.in:8391)

[...] A /branches/relax_disp/test_suite/shared_data/curve_fitting_disp/Hansen/800_MHz/733.33.in_sparky (from /branches/relax_disp/test_suite/shared_data/curve_fitting_disp/dataset_1-b/733.33.in_sparky:8391)

[...] A /branches/relax_disp/test_suite/shared_data/curve_fitting_disp/Hansen/800_MHz/800.in (from /branches/relax_disp/test_suite/shared_data/curve_fitting_disp/dataset_1-b/800.in:8391)

[...] A /branches/relax_disp/test_suite/shared_data/curve_fitting_disp/Hansen/800_MHz/800.in_sparky (from /branches/relax_disp/test_suite/shared_data/curve_fitting_disp/dataset_1-b/800.in_sparky:8391)

[...] A /branches/relax_disp/test_suite/shared_data/curve_fitting_disp/Hansen/800_MHz/866.67.in (from /branches/relax_disp/test_suite/shared_data/curve_fitting_disp/dataset_1-b/866.67.in:8391)

[...] A /branches/relax_disp/test_suite/shared_data/curve_fitting_disp/Hansen/800_MHz/866.67.in_sparky (from /branches/relax_disp/test_suite/shared_data/curve_fitting_disp/dataset_1-b/866.67.in_sparky:8391)

[...] A /branches/relax_disp/test_suite/shared_data/curve_fitting_disp/Hansen/800_MHz/933.33.in (from /branches/relax_disp/test_suite/shared_data/curve_fitting_disp/dataset_1-b/933.33.in:8391)

[...] A /branches/relax_disp/test_suite/shared_data/curve_fitting_disp/Hansen/800_MHz/933.33.in.bis (from /branches/relax_disp/test_suite/shared_data/curve_fitting_disp/dataset_1-b/933.33.in.bis:8391)

[...] A /branches/relax_disp/test_suite/shared_data/curve_fitting_disp/Hansen/800_MHz/933.33.in.bis_sparky (from /branches/relax_disp/test_suite/shared_data/curve_fitting_disp/dataset_1-b/933.33.in.bis_sparky:8391)

[...] A /branches/relax_disp/test_suite/shared_data/curve_fitting_disp/Hansen/800_MHz/933.33.in_sparky (from /branches/relax_disp/test_suite/shared_data/curve_fitting_disp/dataset_1-b/933.33.in_sparky:8391)

[...] A /branches/relax_disp/test_suite/shared_data/curve_fitting_disp/Hansen/800_MHz/reference.in (from /branches/relax_disp/test_suite/shared_data/curve_fitting_disp/dataset_1-b/reference.in:8391)

[...] A /branches/relax_disp/test_suite/shared_data/curve_fitting_disp/Hansen/800_MHz/reference.in_sparky (from /branches/relax_disp/test_suite/shared_data/curve_fitting_disp/dataset_1-b/reference.in_sparky:8391)

[...] D /branches/relax_disp/test_suite/shared_data/curve_fitting_disp/dataset_1-a

[...] D /branches/relax_disp/test_suite/shared_data/curve_fitting_disp/dataset_1-b

[...] M /branches/relax_disp/test_suite/system_tests/scripts/relax_disp_cpmg_fast.py

[...] M /branches/relax_disp/test_suite/system_tests/scripts/relax_disp_cpmg_slow.py

[...]

[...] Renamed the directories containing the sample datasets provided by Flemming Hansen.

[...]

[...] The names are now more obvious as to their content...

[...]

[...] This was proposed by Ed in a post at:

[...] https://mail.gna.org/public/relax-devel/2009-01/msg00056.html

[...] (Message-id: <7f080ed10901111037k75882ca5p6d29a4c3697659c3@mail.gmail.com>)

[...] .....

[...]........

[...] r19212 | bugman | 2013-03-27 14:28:24 +0100 (Wed, 27 Mar 2013) | 26 lines

[...]

[...] Ported r8395 from the old relax_disp branch into the new branch.

[...]

[...] The command used was:

[...] svn merge -r8394:8395 svn+ssh://bugman@svn.gna.org/svn/relax/branches/relax_disp@r18123 .

[...]

[...] .....

[...] r8395 | semor | 2009-01-11 21:21:13 +0100 (Sun, 11 Jan 2009) | 6 lines

[...] Changed paths:

[...] D /branches/relax_disp/test_suite/shared_data/curve_fitting_disp/Hansen/500_MHz/fake_sequence.in

[...] D /branches/relax_disp/test_suite/shared_data/curve_fitting_disp/Hansen/500_MHz/readme

[...] D /branches/relax_disp/test_suite/shared_data/curve_fitting_disp/Hansen/800_MHz/readme

[...] A /branches/relax_disp/test_suite/shared_data/curve_fitting_disp/Hansen/800_MHz/unresolved

[...] A /branches/relax_disp/test_suite/shared_data/curve_fitting_disp/Hansen/fake_sequence.in (from /branches/relax_disp/test_suite/shared_data/curve_fitting_disp/Hansen/500_MHz

[...] /fake_sequence.in:8394)

[...] A /branches/relax_disp/test_suite/shared_data/curve_fitting_disp/Hansen/readme (from /branches/relax_disp/test_suite/shared_data/curve_fitting_disp/Hansen/500_MHz/readme:83

[...] 94)

[...] M /branches/relax_disp/test_suite/system_tests/scripts/relax_disp_cpmg_fast.py

[...] M /branches/relax_disp/test_suite/system_tests/scripts/relax_disp_cpmg_slow.py

[...]

[...] Added an 'unresolved' file to the 800 MHz data and moved (and modified) some files (sequence and

[...] readme) so there is only one copy for the 500 and 800 MHz data.

[...]

[...] This prevents duplicated files.

[...] .....

[...]........

[...] r19213 | bugman | 2013-03-27 14:29:34 +0100 (Wed, 27 Mar 2013) | 21 lines

[...]

[...] Ported r8396 from the old relax_disp branch into the new branch.

[...]

[...] The command used was:

[...] svn merge -r8395:8396 svn+ssh://bugman@svn.gna.org/svn/relax/branches/relax_disp/specific_fns/@r18123 specific_analyses

[...]

[...] .....

[...] r8396 | semor | 2009-01-11 21:29:53 +0100 (Sun, 11 Jan 2009) | 10 lines

[...] Changed paths:

[...] M /branches/relax_disp/specific_fns/relax_disp.py

[...]

[...] Changed the object names so they are lower case as they should be, based on the rest of the code.

[...]

[...] Made the equivalent change in the function assemble_param_vector() to allow the system-test to go

[...] further..

[...]

[...] This was spotted by Ed in a post at:

[...] https://mail.gna.org/public/relax-devel/2009-01/msg00058.html

[...] (Message-id: <7f080ed10901111041n65ecd976ie058ed0500d47746@mail.gmail.com>)

[...] .....

[...]........

[...] r19214 | bugman | 2013-03-27 14:30:35 +0100 (Wed, 27 Mar 2013) | 18 lines

[...]

[...] Ported r8397 from the old relax_disp branch into the new branch.

[...]

[...] The command used was:

[...] svn merge -r8396:8397 svn+ssh://bugman@svn.gna.org/svn/relax/branches/relax_disp/specific_fns/@r18123 specific_analyses

[...]

[...] .....

[...] r8397 | semor | 2009-01-11 22:38:34 +0100 (Sun, 11 Jan 2009) | 7 lines

[...] Changed paths:

[...] M /branches/relax_disp/specific_fns/relax_disp.py

[...]

[...] Corrected capitalisation issues for param names.

[...]

[...] These were spotted by Ed in a thread starting at:

[...] https://mail.gna.org/public/relax-devel/2009-01/msg00059.html

[...] (Message-id: <7f080ed10901111240o15a93096w59b397684b010634@mail.gmail.com>)

[...] .....

[...]........

[...] r19215 | bugman | 2013-03-27 14:31:30 +0100 (Wed, 27 Mar 2013) | 17 lines

[...]

[...] Ported r8398 from the old relax_disp branch into the new branch.

[...]

[...] The command used was:

[...] svn merge -r8397:8398 svn+ssh://bugman@svn.gna.org/svn/relax/branches/relax_disp@r18123 .

[...]

[...] .....

[...] r8398 | semor | 2009-01-12 01:53:01 +0100 (Mon, 12 Jan 2009) | 5 lines

[...] Changed paths:

[...] M /branches/relax_disp/test_suite/system_tests/scripts/relax_disp_cpmg_fast.py

[...] M /branches/relax_disp/test_suite/system_tests/scripts/relax_disp_cpmg_slow.py

[...]

[...] Rearranged commands in the scripts.

[...]

[...] The experiment type and exchange regime will have to be input before the cpmg pulse train delay T.

[...] .....

[...]........

[...] r19216 | bugman | 2013-03-27 14:32:24 +0100 (Wed, 27 Mar 2013) | 16 lines

[...]

[...] Ported r8399 from the old relax_disp branch into the new branch.

[...]

[...] The command used was:

[...] svn merge -r8398:8399 svn+ssh://bugman@svn.gna.org/svn/relax/branches/relax_disp/specific_fns/@r18123 specific_analyses

[...]

[...] .....

[...] r8399 | semor | 2009-01-12 01:54:56 +0100 (Mon, 12 Jan 2009) | 5 lines

[...] Changed paths:

[...] M /branches/relax_disp/specific_fns/relax_disp.py

[...]

[...] Introduced a relaxError when chosing 'r1rho' as experiment type as this won't be implemented now.

[...]

[...] Efforts will be concentrated on the CPMG code first, then on the R1rho code.

[...] .....

[...]........

[...] r19217 | bugman | 2013-03-27 14:32:54 +0100 (Wed, 27 Mar 2013) | 18 lines

[...]

[...] Ported r8415 from the old relax_disp branch into the new branch.

[...]

[...] The command used was:

[...] svn merge -r8414:8415 svn+ssh://bugman@svn.gna.org/svn/relax/branches/relax_disp/specific_fns/@r18123 specific_analyses

[...]

[...] .....

[...] r8415 | semor | 2009-01-12 14:27:11 +0100 (Mon, 12 Jan 2009) | 7 lines

[...] Changed paths:

[...] M /branches/relax_disp/specific_fns/relax_disp.py

[...]

[...] Added tests, print statements and other code to the relaxation dispersion specific functions.

[...]

[...] Tests were proosed by Ed in a post at:

[...] https://mail.gna.org/public/relax-devel/2009-01/msg00065.html

[...] (Message-id: <7f080ed10901120107t4f1cd53ew51f498a45a38eade@mail.gmail.com>)

[...] .....

[...]........

[...] r19218 | bugman | 2013-03-27 14:33:37 +0100 (Wed, 27 Mar 2013) | 16 lines

[...]

[...] Ported r8417 from the old relax_disp branch into the new branch.

[...]

[...] The command used was:

[...] svn merge -r8416:8417 svn+ssh://bugman@svn.gna.org/svn/relax/branches/relax_disp/specific_fns/@r18123 specific_analyses

[...]

[...] .....

[...] r8417 | semor | 2009-01-12 14:42:33 +0100 (Mon, 12 Jan 2009) | 5 lines

[...] Changed paths:

[...] M /branches/relax_disp/specific_fns/relax_disp.py

[...]

[...] Made a few corrections proposed by Ed in a post at:

[...] https://mail.gna.org/public/relax-devel/2009-01/msg00066.html

[...] (Message-id: <7f080ed10901120532h736892bbmd03483b4decadf39@mail.gmail.com>)

[...] .....

[...]........

[...] r19219 | bugman | 2013-03-27 14:40:58 +0100 (Wed, 27 Mar 2013) | 21 lines

[...]

[...] Ported r8426 from the old relax_disp branch into the new branch.

[...]

[...] The command used was:

[...] svn merge -r8425:8426 svn+ssh://bugman@svn.gna.org/svn/relax/branches/relax_disp/specific_fns/@r

(Browse SVN revision 21659)

Edward d Auvergne <bugman>
Project AdministratorIn charge of this item.
Mon 14 Oct 2013 06:22:51 PM UTC, SVN revision 21101:

The dispersion multi-processor optimisation code now prints out its own simulation messages.

This is to fix bug #21190 (https://gna.org/bugs/?21190).

The memo object now is feed in the spin IDs of the cluster and stores this as the cluster_name
variable. This is used by the results object run() method, which is run on the master at the end,
to print out a message along the lines of "Simulation X, cluster yyy". Therefore the message is
only printed out once the calculation of that slave command is complete and returned to the master.

(Browse SVN revision 21101)

Edward d Auvergne <bugman>
Project AdministratorIn charge of this item.
Mon 14 Oct 2013 06:18:44 PM UTC, SVN revision 21100:

Merged revisions 21099 via svnmerge from
svn+ssh://bugman@svn.gna.org/svn/relax/trunk

........
r21099 | bugman | 2013-10-14 20:18:11 +0200 (Mon, 14 Oct 2013) | 11 lines

Modified the Monte Carlo simulation printout behaviour for the minimisation related user functions.

This is to help in fixing bug #21190 (https://gna.org/bugs/?21190).

This includes the calculate, grid_search, and minimise user functions. The new multi-processor
is_queued() method is used to determine if the optimisation code of the specific analysis has queued
rather than run the calculations. If queued, the 'Simulation X' text will not be printed out. This
avoids printing out all the text at the start before anything has happened. The specific
multi-processor optimisation code must provide it's own printouts when each calculation is complete.
........

(Browse SVN revision 21100)

Edward d Auvergne <bugman>
Project AdministratorIn charge of this item.
Mon 14 Oct 2013 06:18:13 PM UTC, SVN revision 21099:

Modified the Monte Carlo simulation printout behaviour for the minimisation related user functions.

This is to help in fixing bug #21190 (https://gna.org/bugs/?21190).

This includes the calculate, grid_search, and minimise user functions. The new multi-processor
is_queued() method is used to determine if the optimisation code of the specific analysis has queued
rather than run the calculations. If queued, the 'Simulation X' text will not be printed out. This
avoids printing out all the text at the start before anything has happened. The specific
multi-processor optimisation code must provide it's own printouts when each calculation is complete.

(Browse SVN revision 21099)

Edward d Auvergne <bugman>
Project AdministratorIn charge of this item.
Mon 14 Oct 2013 05:26:52 PM UTC, comment #2:

Troels, I'll tackle this one. Comment one is correct, the text is printed at the start of the code rather than end, hence everything is printed before anything happens. This requires some small changes to Gary's multi-processor package.

Edward d Auvergne <bugman>
Project AdministratorIn charge of this item.
Mon 14 Oct 2013 05:05:53 PM UTC, comment #1:

This could be to do with the parallelisation of the Monte Carlo simulations. I'll look more into it, but it could be printing the 'Simulation X' text when queuing the simulations, and then running the queued simulations without printout after the last 'Simulation X' text is printed.

Edward d Auvergne <bugman>
Project AdministratorIn charge of this item.
Sat 12 Oct 2013 12:55:53 PM UTC, original submission:

When I do MC simulations, for example 50, it runs quickly through to the 50th simulation, and then halt for a long time.

It this behavior normal?

I think i recall that each MC step used to use same amount of time.
But maybe relax is calculating all the steps, to put them together in the end?

Best

Reference:
http://article.gmane.org/gmane.science.nmr.relax.devel/4670

Troels E. Linnet <tlinnet>
Project Member

 

(Note: upload size limit is set to 1024 kB, after insertion of the required escape characters.)

Attach File(s):
   
   
Comment:
   

No files currently attached

 

Depends on the following items: None found

Items that depend on this one: None found

 

Carbon-Copy List
  • -unavailable- added by bugman (Posted a comment)
  • -unavailable- added by tlinnet (Submitted the item)
  •  

    Do you think this task is very important?
    If so, you can click here to add your encouragement to it.
    This task has 0 encouragements so far.

    Only logged-in users can vote.

     

    Please enter the title of George Orwell's famous dystopian book (it's a date):

     

     

    Follow 6 latest changes.

    Date Changed By Updated Field Previous Value => Replaced By
    Mon 14 Oct 2013 06:23:22 PM UTCbugmanStatusIn Progress=>Fixed
      Open/ClosedOpen=>Closed
    Mon 14 Oct 2013 05:26:52 PM UTCbugmanStatusConfirmed=>In Progress
      Assigned toNone=>bugman
      Operating SystemGNU/Linux=>All systems
    Mon 14 Oct 2013 05:05:53 PM UTCbugmanStatusNone=>Confirmed
    Show feedback again

    Back to the top


    Powered by Savane 3.1-cleanup