### Eclipse Workspace Patch 1.0
#P eclox.ui
Index: src/eclox/ui/editor/Editor.java
===================================================================
RCS file: /cvs/eclox/eclox.ui/src/eclox/ui/editor/Editor.java,v
retrieving revision 1.3
diff -u -r1.3 Editor.java
--- src/eclox/ui/editor/Editor.java	2 Mar 2007 14:04:04 -0000	1.3
+++ src/eclox/ui/editor/Editor.java	10 Jul 2007 19:08:22 -0000
@@ -30,6 +30,7 @@
 import org.eclipse.ui.IEditorPart;
 import org.eclipse.ui.IEditorSite;
 import org.eclipse.ui.IFileEditorInput;
+import org.eclipse.ui.IURIEditorInput;
 import org.eclipse.ui.PartInitException;
 import org.eclipse.ui.forms.editor.FormEditor;
 
@@ -136,23 +137,47 @@
      */
     public void init( IEditorSite site, IEditorInput input ) throws PartInitException {
         try {
-            IFileEditorInput	fileInput = (IFileEditorInput) input;
-            
-            // Attaches the resource change listener
-            resourceChangeListener = new ResourceChangeListener(this);
-            ResourcesPlugin.getWorkspace().addResourceChangeListener( resourceChangeListener );
-            
-            // Parses the doxyfile and attaches to all settings.
-            this.doxyfile = new Doxyfile(fileInput.getFile());
-            Iterator	i = this.doxyfile.settingIterator();
-            while( i.hasNext() == true ) {
-                Setting	setting = (Setting) i.next();
-                setting.addSettingListener( this );
-            }
-            
-            // Continue initialization.
-	        this.setPartName(input.getName());
-	        super.init(site, input);
+        	if( input != null ) {
+        		if( input instanceof IFileEditorInput) {
+		            IFileEditorInput	fileInput = (IFileEditorInput) input;
+		            
+		            // Attaches the resource change listener
+		            resourceChangeListener = new ResourceChangeListener(this);
+		            ResourcesPlugin.getWorkspace().addResourceChangeListener( resourceChangeListener );
+		            
+		            // Parses the doxyfile and attaches to all settings.
+		            this.doxyfile = new Doxyfile(fileInput.getFile());
+		            Iterator	i = this.doxyfile.settingIterator();
+		            while( i.hasNext() == true ) {
+		                Setting	setting = (Setting) i.next();
+		                setting.addSettingListener( this );
+		            }
+		            
+		            // Continue initialization.
+		            this.setPartName(input.getName());
+		            super.init(site, input);
+        		}
+        		else if( input instanceof IURIEditorInput ) {
+        			IURIEditorInput	fileInput = (IURIEditorInput) input;
+		            
+		            // Outside the workspace: no resource change listener
+
+        			// Parses the doxyfile and attaches to all settings.
+		            this.doxyfile = new Doxyfile(fileInput.getURI());
+		            Iterator	i = this.doxyfile.settingIterator();
+		            while( i.hasNext() == true ) {
+		                Setting	setting = (Setting) i.next();
+		                setting.addSettingListener( this );
+		            }
+		            
+		            // Continue initialization.
+		            this.setPartName(input.getName());
+		            super.init(site, input);
+        		}
+        	}
+        	else {
+                throw new PartInitException( "Non supported input:" + input );
+        	}
         }
         catch( PartInitException partInitException ) {
             throw partInitException;
Index: src/eclox/ui/editor/editors/Convenience.java
===================================================================
RCS file: /cvs/eclox/eclox.ui/src/eclox/ui/editor/editors/Convenience.java,v
retrieving revision 1.1
diff -u -r1.1 Convenience.java
--- src/eclox/ui/editor/editors/Convenience.java	15 Mar 2007 16:14:05 -0000	1.1
+++ src/eclox/ui/editor/editors/Convenience.java	10 Jul 2007 19:08:23 -0000
@@ -227,13 +227,13 @@
 		// Retrieves the initial path.
 		IPath	initialPath = new Path( path );
 		if( initialPath.isAbsolute() == false ) {
-			initialPath = doxyfile.getParentContainer().getLocation().append( initialPath );
+			initialPath = doxyfile.getParentContainerLocation().append( initialPath );
 		}
 		
 		// If the initial path is not valid, use the doxyfile location as fall back.
 		File	file = new File( initialPath.toOSString() );
 		if( file.exists() == false ) {
-			initialPath = doxyfile.getParentContainer().getLocation();
+			initialPath = doxyfile.getParentContainerLocation();
 		}
 		
 		// Displayes the directory dialog to the user
Index: META-INF/MANIFEST.MF
===================================================================
RCS file: /cvs/eclox/eclox.ui/META-INF/MANIFEST.MF,v
retrieving revision 1.14
diff -u -r1.14 MANIFEST.MF
--- META-INF/MANIFEST.MF	23 Apr 2007 13:43:15 -0000	1.14
+++ META-INF/MANIFEST.MF	10 Jul 2007 19:08:22 -0000
@@ -13,5 +13,6 @@
  org.eclipse.core.resources,
  org.eclipse.ui.ide,
  org.eclipse.ui.forms,
- org.eclipse.ui.editors
+ org.eclipse.ui.editors,
+ org.eclipse.core.filesystem
 Eclipse-AutoStart: true
#P eclox.core
Index: META-INF/MANIFEST.MF
===================================================================
RCS file: /cvs/eclox/eclox.core/META-INF/MANIFEST.MF,v
retrieving revision 1.13
diff -u -r1.13 MANIFEST.MF
--- META-INF/MANIFEST.MF	23 Apr 2007 13:43:18 -0000	1.13
+++ META-INF/MANIFEST.MF	10 Jul 2007 19:08:24 -0000
@@ -7,7 +7,8 @@
 Bundle-Localization: plugin
 Require-Bundle: org.eclipse.core.resources,
  org.eclipse.core.runtime,
- org.eclipse.ui
+ org.eclipse.ui,
+ org.eclipse.core.filesystem
 Bundle-Activator: eclox.core.Plugin
 Export-Package: eclox.core,
  eclox.core.doxyfiles,
Index: src/eclox/core/doxyfiles/Doxyfile.java
===================================================================
RCS file: /cvs/eclox/eclox.core/src/eclox/core/doxyfiles/Doxyfile.java,v
retrieving revision 1.2
diff -u -r1.2 Doxyfile.java
--- src/eclox/core/doxyfiles/Doxyfile.java	22 Mar 2007 11:54:03 -0000	1.2
+++ src/eclox/core/doxyfiles/Doxyfile.java	10 Jul 2007 19:08:24 -0000
@@ -21,13 +21,16 @@
 
 package eclox.core.doxyfiles;
 
+import java.io.FileInputStream;
 import java.io.IOException;
+import java.net.URI;
 import java.util.AbstractList;
 import java.util.Iterator;
 import java.util.LinkedHashMap;
 import java.util.Map;
 import java.util.Vector;
 
+import org.eclipse.core.filesystem.URIUtil;
 import org.eclipse.core.resources.IContainer;
 import org.eclipse.core.resources.IFile;
 import org.eclipse.core.resources.IResource;
@@ -50,7 +53,13 @@
 	 * the file that holds the doxyfile content
 	 */
 	private IFile file;
-	
+
+	/**
+	 * path to the file that holds the doxyfile content,
+	 * not necessariliy a workspace resource. 
+	 */
+	private IPath fileLocation;
+
 	/**
 	 * a collection containing all doxyfile's chunks
 	 */
@@ -109,13 +118,32 @@
 	 * @param	file	a file resource instance that is assumed to be a doxyfile
 	 */
 	public Doxyfile( IFile file ) throws IOException, CoreException {
-		this.file = file;
+		//this.file = file;
+		this.fileLocation = file.getLocation();
 		
 	    Parser parser = new Parser(file.getContents());
 	    parser.read( this );
 	}
 	
 	/**
+	 * Constructor
+	 * 
+	 * @param	file	a file resource instance that is assumed to be a doxyfile
+	 */
+	public Doxyfile( URI uri ) throws IOException, CoreException {
+		fileLocation = URIUtil.toPath(uri);
+		file = null;
+		
+		if( fileLocation == null ) {
+			throw new IOException();
+		}
+
+		FileInputStream in = new FileInputStream(fileLocation.toFile());
+	    Parser parser = new Parser(in);
+	    parser.read( this );
+	}
+	
+	/**
 	 * Appends a new chunk to the doxyfile
 	 * 
 	 * @param	chunk	a chunk to append to the doxyfile
@@ -199,16 +227,40 @@
 	 * @return	a container instance
 	 */
 	public IContainer getParentContainer() {
-		return file.getParent();
+		
+		if( file != null)
+			return file.getParent();
+
+		return null;
 	}
-	
+
+	/**
+	 * Concatenates the given path to the container of
+	 * the doxyfile.
+	 * 
+	 *  If the given path is already absolute, the
+	 *  same path is returned. 
+	 * 
+	 * @param relativePath path relative to the doxyfile
+	 * 
+	 * @return the absolute path.
+	 */
+	public IPath getParentContainerLocation()
+	{
+		//if doxyfile is an IFile (i.e. is in workspace)
+		if( file != null)
+			return getParentContainer().getLocation();
+
+		return getResourceLocation().removeLastSegments(1);
+	}
+
 	/**
 	 * Retrieves the location of the doxyfile
 	 * 
 	 * @return	a path containing the doxyfile location
 	 */
 	public IPath getResourceLocation() {
-		return file.getLocation();
+		return fileLocation;
 	}
 	
 	/**
@@ -217,7 +269,7 @@
 	 * @return	true or false
 	 */
 	public boolean isPathRelative( IPath path ) {
-		return file.getLocation().removeLastSegments(1).isPrefixOf( path );
+		return fileLocation.removeLastSegments(1).isPrefixOf( path );
 	}
 	
 	/**
@@ -229,7 +281,7 @@
 	 */
 	public IPath makePathRelative( IPath path ) {
 		if( isPathRelative(path) ) {
-			int matchingCount = file.getLocation().removeLastSegments(1).matchingFirstSegments( path );
+			int matchingCount = fileLocation.removeLastSegments(1).matchingFirstSegments( path );
 			return path.removeFirstSegments( matchingCount ).setDevice( new String() );
 		}
 		else {