Bio++ Suite contains the following components:

• bppPars
  • Optimize a phylogenetic tree according to maximum parsimony.
• bppDist
  • Estimate a distance matrix and build a phylogenetic tree according to several model of evolution and reconstruction methods.
• bppML
  • Optimize a phylogenetic tree and other model parameters according to maximum likelihood. Several models are supported.
• bppSeqGen
  • Simulate data sets according to a phylogenetic tree and an evolutionary model.
• bppAncestor
  • Reconstruct ancestral sequences.
• bppConsense
  • Build consensus trees and compute bootstrap values.
• bppSeqMan
  • Sequence manipulation and file format conversion.
• bppPhySamp
  • Sample sequences from a file according to a phylogenetic tree.
• bppReRoot
  • Reroot all trees in a file according to a user-specified list of outgroups.

All programs share a common option file format.

Registration Date: Wed 16 May 2007 09:22:39 AM UTC
License: Other, GPL Compatible
Development Status: 5 - Production/Stable