mainBio++ Program Suite - Summary

 
 
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Group identification
Id: #2212
System Name: bppsuite
Name: Bio++ Program Suite
Group Type: Programs

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Bio++ Suite contains the following components:

  • bppPars
    • Optimize a phylogenetic tree according to maximum parsimony.
  • bppDist
    • Estimate a distance matrix and build a phylogenetic tree according to several model of evolution and reconstruction methods.
  • bppML
    • Optimize a phylogenetic tree and other model parameters according to maximum likelihood. Several models are supported.
  • bppSeqGen
    • Simulate data sets according to a phylogenetic tree and an evolutionary model.
  • bppAncestor
    • Reconstruct ancestral sequences.
  • bppConsense
    • Build consensus trees and compute bootstrap values.
  • bppSeqMan
    • Sequence manipulation and file format conversion.
  • bppPhySamp
    • Sample sequences from a file according to a phylogenetic tree.
  • bppReRoot
    • Reroot all trees in a file according to a user-specified list of outgroups.

All programs share a common option file format.

Registration Date: Wed 16 May 2007 09:22:39 AM UTC
License: Other, GPL Compatible
Development Status: 5 - Production/Stable

 

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