mainCoalHMM - Summary

 
 
Show feedback again
Membership Info
Project Admin:
4 active members

Group identification
Id: #3012
System Name: coalhmm
Name: CoalHMM
Group Type: Programs

Search in this Group

in
   

CoalHMM is a program + library implementing the so-called Coalescent Hidden Markov Model approach. This methodology was first introduced in 2007 http://www.plosgenetics.org/article/info%3Adoi%2F10.1371%2Fjournal.pgen.0030007
and further developed in http://www.ncbi.nlm.nih.gov/pubmed/19581452?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum

The package provided here implements both the 2007 and 2009 methods, plus further developments to be published soon. These models are currently used in several large-scale genome sequencing projects, including Orangutan, Gorilla, Macaques and fungus Mycosphaerella graminicola.

The package consists mostly of a C++ program linking the Bio++ libraries http://kimura.univ-montp2.fr/BioPP/.

Registration Date: Mon 07 Sep 2009 06:22:23 PM UTC
License: GNU General Public License V3 or later
Development Status: 4 - Beta

 

Latest News 
Show feedback again

Back to the top


Powered by Savane 3.1-cleanup