helprelax - Support: sr #3044, Load spins from SPARKY list.

 
 
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sr #3044: Load spins from SPARKY list.

Submitted by:  Troels E. Linnet <tlinnet>
Submitted on:  Tue 18 Jun 2013 12:52:25 PM UTC  
 
Category: NonePriority: 5 - Normal
Severity: 3 - NormalStatus: Done
Assigned to: Troels E. Linnet <tlinnet>Open/Closed: Closed
Operating System: None

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Mon 09 Dec 2013 12:59:30 PM UTC, comment #6:

This is now complete, since a GUI test has been implemented.

Troels E. Linnet <tlinnet>
Project MemberIn charge of this item.
Fri 06 Dec 2013 06:44:07 PM UTC, comment #5:

This function now needs to be implemented in the GUI.

Is there a place to get some hints how to construct such a GUI test
for opening:
- The spin viewer/editor
- Select load spins

And then here select a new point intensity lists.

Troels E. Linnet <tlinnet>
Project MemberIn charge of this item.
Fri 06 Dec 2013 06:32:01 PM UTC, comment #4:

Hi Edward.

Some of the code is quite much replicated.

Should one create another file with shared functions, which is repeated
in the files, or just leave it as it is?

Troels E. Linnet <tlinnet>
Project MemberIn charge of this item.
Tue 10 Sep 2013 06:50:03 AM UTC, comment #3:

With the new Peak_list object in lib.spectrum.objects, the implementation of this feature should be rather trivial. The code would be very similar to that of the spectrum.read_intensities user function back end.

A plan for the implementation is given in http://thread.gmane.org/gmane.science.nmr.relax.devel/3972/focus=4347. More details can be found in that thread.

Edward d Auvergne <bugman>
Project Administrator
Sat 03 Aug 2013 06:56:05 AM UTC, comment #2:

Initial tries for a SPARKY/NMRPipe seriesTab GUI read of spins.

If these patches are ok, it would be time to establish system tests, and I hope for a little guide in which files these should be written.

(file #18632)

Troels E. Linnet <tlinnet>
Project MemberIn charge of this item.
Fri 02 Aug 2013 04:39:25 PM UTC, comment #1:

Also wished to do spin loading from NMRPipe seriestab and maybe FASTA.

Troels E. Linnet <tlinnet>
Project MemberIn charge of this item.
Tue 18 Jun 2013 12:52:25 PM UTC, original submission:

It is wished the possibility to do Spin loading according to a SPARKY file format.

This can be handsome, when a structure has not yet been solved and released as pdb file.

It will also speed up the possibility to create/setup dispersion analysis within a short amount of time.

Troels E. Linnet <tlinnet>
Project MemberIn charge of this item.

 

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Attach File(s):
   
   
Comment:
   

Attached Files
file #18632:  sparky1.patch.tar.gz added by tlinnet (5kB - application/gzip)

 

Depends on the following items: None found

Items that depend on this one: None found

 

Carbon-Copy List
  • -unavailable- added by bugman (Posted a comment)
  • -unavailable- added by tlinnet (Submitted the item)
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    Follow 6 latest changes.

    Date Changed By Updated Field Previous Value => Replaced By
    Mon 09 Dec 2013 01:06:41 PM UTCbugmanStatusNone=>Done
      Assigned toNone=>tlinnet
    Mon 09 Dec 2013 12:59:30 PM UTCtlinnetOpen/ClosedOpen=>Closed
    Tue 10 Sep 2013 06:50:03 AM UTCbugmanOperating SystemGNU/Linux=>None
      SummaryLoad spins from SPARKY list=>Load spins from SPARKY list.
    Sat 03 Aug 2013 06:56:05 AM UTCtlinnetAttached File-=>Added sparky1.patch.tar.gz, #18632
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