bugrelax - Bugs: bug #20253, The multi-processor code is broken...

Show feedback again

bug #20253: The multi-processor code is broken because of the missing Queue module.

Submitted by:  Edward d Auvergne <bugman>
Submitted on:  Sat 20 Oct 2012 04:35:14 PM UTC  
Category: relax's source codeSpecific analysis category: None
Priority: 5 - NormalSeverity: 3 - Normal
Status: FixedAssigned to: Edward d Auvergne <bugman>
Originator Name: Open/Closed: Closed
Release: 2.1.2Operating System: All systems

Add a New Comment (Rich MarkupRich Markup):

You are not logged in

Please log in, so followups can be emailed to you.


Sat 20 Oct 2012 04:35:14 PM UTC, original submission:

Running the multi-processor code, in this case for the Frame Order theory, triggers the bug in all cases with the error:

relax> calc(verbosity=1)
Numerical integration via the quasi-random Sobol' sequence.
Number of integration points: 1000
Base data: ['PCSs']
Traceback (most recent call last):
File "/data/edau/relax/branches/frame_order_testing/multi/processor.py", line 479, in run
File "/data/edau/relax/branches/frame_order_testing/multi/__init__.py", line 318, in default_init_master
File "/data/edau/relax/branches/frame_order_testing/relax.py", line 186, in run
File "/data/edau/relax/branches/frame_order_testing/prompt/interpreter.py", line 278, in run
return run_script(intro=self.__intro_string, local=locals(), script_file=script_file, quit=self.__quit_flag, show_script=self.__show_script, raise_relax_error=self.__raise_relax_error)
File "/data/edau/relax/branches/frame_order_testing/prompt/interpreter.py", line 585, in run_script
return console.interact(intro, local, script_file, quit, show_script=show_script, raise_relax_error=raise_relax_error)
File "/data/edau/relax/branches/frame_order_testing/prompt/interpreter.py", line 468, in interact_script
exec_script(script_file, local)
File "/data/edau/relax/branches/frame_order_testing/prompt/interpreter.py", line 341, in exec_script
runpy.run_module(module, globals)
File "/usr/lib64/python2.6/runpy.py", line 140, in run_module
fname, loader, pkg_name)
File "/usr/lib64/python2.6/runpy.py", line 34, in _run_code
exec code in run_globals
File "/data/edau/relax/branches/frame_order_testing/test_suite/shared_data/frame_order/cam/pseudo_ellipse/multi_processor_test.py", line 98, in <module>
File "/data/edau/relax/branches/frame_order_testing/prompt/uf_objects.py", line 219, in _call_
self._backend(*new_args, **uf_kargs)
File "/data/edau/relax/branches/frame_order_testing/generic_fns/minimise.py", line 81, in calc
File "/data/edau/relax/branches/frame_order_testing/specific_fns/frame_order.py", line 1585, in calculate
chi2 = model.func(param_vector)
File "/data/edau/relax/branches/frame_order_testing/maths_fns/frame_order/__init__.py", line 1216, in func_pseudo_ellipse_qrint
File "/data/edau/relax/branches/frame_order_testing/multi/processor.py", line 622, in run_queue
File "/data/edau/relax/branches/frame_order_testing/multi/processor.py", line 575, in run_command_queue
result_queue = Threaded_result_queue(self)
File "/data/edau/relax/branches/frame_order_testing/multi/result_queue.py", line 82, in _init_
self.queue = Queue.Queue()
NameError: global name 'Queue' is not defined
MPI_ABORT was invoked on rank 0 in communicator MPI_COMM_WORLD
with errorcode 0.

NOTE: invoking MPI_ABORT causes Open MPI to kill all MPI processes.
You may or may not see output from other processes, depending on
exactly when Open MPI kills them.
mpirun has exited due to process rank 0 with PID 366 on
node localhost exiting without calling "finalize". This may
have caused other processes in the application to be
terminated by signals sent by mpirun (as reported here).

Edward d Auvergne <bugman>
Project AdministratorIn charge of this item.


(Note: upload size limit is set to 1024 kB, after insertion of the required escape characters.)

Attach File(s):

No files currently attached


Depends on the following items: None found

Items that depend on this one: None found


Carbon-Copy List
  • -unavailable- added by bugman (Submitted the item)

    Do you think this task is very important?
    If so, you can click here to add your encouragement to it.
    This task has 0 encouragements so far.

    Only logged-in users can vote.


    Error: not logged in



    Follow 2 latest changes.

    Date Changed By Updated Field Previous Value => Replaced By
    Sat 20 Oct 2012 04:37:11 PM UTCbugmanStatusNone=>Fixed
    Show feedback again

    Back to the top

    Powered by Savane 3.1-cleanup